View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6177_low_8 (Length: 272)
Name: NF6177_low_8
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 7543415 - 7543164
Alignment:
| Q |
19 |
atatacttggccgttgatgcttcctaccatacaatcaaccatcattttagtcataatcaaaataannnnnnnn---------gactagtggtggcaaaga |
109 |
Q |
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| T |
7543415 |
atatacttggccgttgatgcttcctaccatacaatcaaccatcattttagtcataatcaaaataaatcaaaataatttttttgactattggtggcaaaga |
7543316 |
T |
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| Q |
110 |
gcatttactataaattattagatcaatatacatcaatgaatagacaaaaactggaggttatgaaaactatataagtgtgtnnnnnnnnnnnnnnntatac |
209 |
Q |
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| T |
7543315 |
gcatttactataaattattagatcaatatacatcaatgaatagacaaaaactggaggttatgaaaactatataagtgagtaaaaaaactaaaaaatatac |
7543216 |
T |
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| Q |
210 |
aaatgtctatttctctacaaatctgatcaacaaaattaacaattcatctcat |
261 |
Q |
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| T |
7543215 |
aaatgtctatttctctacaaatctgatcaacaaaattaacaattcatttcat |
7543164 |
T |
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