View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_13 (Length: 503)
Name: NF6178_high_13
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 135 - 435
Target Start/End: Original strand, 42462746 - 42463049
Alignment:
| Q |
135 |
ttatctacactccatatttgtccctcaaataaaagaacggtgcaaatctcaaaatggttttgaaaaaatcaaaacccctttgattgagtgatgagtctcc |
234 |
Q |
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| T |
42462746 |
ttatctacactccatatttgtacctcaaataaaagaacggtgcaaatctcaaaatgggtt-gaaaaaatcaaaacccctttgattgagtgatgagtctcc |
42462844 |
T |
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| Q |
235 |
caacctattgcattccacttgcacttgtacatcaatcacacaaaatgttccttgtcctttatcaaacgacaaatttcacatgaaatatcatatattaaac |
334 |
Q |
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| T |
42462845 |
caacctattgcattccacttgcacttgtacatcaatcacac--aatgttccttgtcctttatcaaacgacaaatttcacatgaaatatcatatattaaac |
42462942 |
T |
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| Q |
335 |
gacaaacttttaaaccatataat------nnnnnnnnnnnnnntattaaatatcttactctatggtccataattacaagatcacaattcacacatactct |
428 |
Q |
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| T |
42462943 |
gacaaacttttaaaccatataataaaaaataaaaaataaaaaatattaaatatcttactctatggtccataattacaagatcacaattcacatatactct |
42463042 |
T |
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| Q |
429 |
tattctg |
435 |
Q |
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| T |
42463043 |
tattctg |
42463049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 42462627 - 42462711
Alignment:
| Q |
31 |
catcactcacaaccgaattgtattttaaactgtctcagatgcgatgtccaatctttccgcatctaaataaaataacgcatttcat |
115 |
Q |
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| T |
42462627 |
catcactcacaaccgaattgtattttaaactgtctcagatatcatgtccaatttttgcgtatctaaataaaataacacatttcat |
42462711 |
T |
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