View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_15 (Length: 482)
Name: NF6178_high_15
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_15 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 102000 - 101641
Alignment:
| Q |
18 |
aatagtagtaagtactcaccaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctagatggtg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102000 |
aatattagtaagtactcaccaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctagatggtg |
101901 |
T |
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| Q |
118 |
tgtgccccttctcaacgttgtcgttgctttctcatatgttatctcttctccatcttctatcttcactccatctattgtttgcttaaagttattttctctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
101900 |
tgtgccccttctcaacgttgtcgttgctttctcatatgttatctcttctccatcttctatcttcactccatctattgtttgcataaagttattttctctt |
101801 |
T |
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| Q |
218 |
agaacctgcaatgccaaccagcaaaaatattaaaaaatgcaccatggataatgatagatgctacaaatcgaagtttggagaaaagaggaattttctcctt |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
101800 |
agaacctacaatgccaaccagcaaaaatattaaaaaatgcaccatggataatgatagatcctacaaatggaagtttggagaaaagaggaattttctcctt |
101701 |
T |
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| Q |
318 |
ctcaaataataacttcatttagcatttggatttcgtaaattgctctaatatttaaatatt |
377 |
Q |
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| T |
101700 |
cttaaataataacttcatttagcatttggatttcgtaaattgctctaatatttaaatatt |
101641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 161354 - 161159
Alignment:
| Q |
30 |
tactcaccaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctagatggtgtgtgccccttct |
129 |
Q |
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| T |
161354 |
tactcaccaagggaggcatgtaaaacagaggacctgcaatttgagcaggccaatggccatcttgagtttgcaatgctactaggtgacgtgtgccttttct |
161255 |
T |
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| Q |
130 |
caacgttgtcgttgctttctcatatgttatctcttctccatcttctatcttcactccatctattgtttgcttaaagttattttctcttagaacctg |
225 |
Q |
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| T |
161254 |
taatgtctttgtggctttctcatatgttatctcttctccatcttctatctttacactatctattgtttgcttaaagttattttctcttaaaacctg |
161159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 93931 - 94130
Alignment:
| Q |
25 |
gtaagtactcaccaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctagatggtgtgtgccc |
124 |
Q |
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||||||||||||||| ||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
93931 |
gtaagtactcaccaaaggaggaacgtaaaatagaggccctgcaatttgagcaggccaatggccatcactggtttgcaatgcagctaggtgatgtgtgcct |
94030 |
T |
|
| Q |
125 |
cttctcaacgttgtcgttgctttctcatatgttatctcttctccatcttctatcttcactccatctattgtttgcttaaagttattttctcttagaacct |
224 |
Q |
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| T |
94031 |
cttctcaaagctgttgtggctttctcatatgttatttcttcttcatcttctatcttcacaccggctattgtttgcttgaagttattttcttttaggacct |
94130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 13051341 - 13051131
Alignment:
| Q |
35 |
accaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctagatggtgtgtgccccttctcaacg |
134 |
Q |
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||||| ||||| |||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||||| || || | ||||||||| || | |
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| T |
13051341 |
accaaaggaggaatgaaaaacaaaggaccagcaatttgagcaggccaatgaccatcactggtttgcaatgctgctaggtgatgcgcgccccttcttaatg |
13051242 |
T |
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| Q |
135 |
ttgtcgttgctttctcatatgttatctcttctccatcttctatcttcactccatctattgtttgcttaaagttattttctcttagaacctgcaatgccaa |
234 |
Q |
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| T |
13051241 |
tcgttgtagctttctcatatgttatctcttctccatcttctatcttcacaccaccagtcacttgcttaaatttattttctctaagaacctgcaatgccaa |
13051142 |
T |
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| Q |
235 |
ccagcaaaaat |
245 |
Q |
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||||||||| |
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| T |
13051141 |
gaagcaaaaat |
13051131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 12138598 - 12138784
Alignment:
| Q |
30 |
tactcaccaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctagatggtgtgtgccccttct |
129 |
Q |
| |
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|||||||||||||||| | |||||| | ||||||||| |||||||||||||||||||||| || || |||||||| ||||| || || | ||||||||| |
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| T |
12138598 |
tactcaccaagggaggaaggaaaaacattggacctgcattttgagcaggccaatggccatcgctagtctgcaatgccgctaggtgatgcgcgccccttct |
12138697 |
T |
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| Q |
130 |
caacgttgtcgttgctttctcatatgttatctcttctccatcttctatcttcactccatctattgtttgcttaaagttattttctct |
216 |
Q |
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| T |
12138698 |
caccgtcgttgttagtttctcatatgttatgtcctcgccatcttctattttcacaccacatattctttgtttgaacttattttctct |
12138784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 5672575 - 5672639
Alignment:
| Q |
157 |
tatctcttctccatcttctatcttcactccatctattgtttgcttaaagttattttctcttagaa |
221 |
Q |
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|||||||||||||||||| ||||| || | |||||||||| ||||| ||||||||||| |||| |
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| T |
5672575 |
tatctcttctccatcttcaatctttacacttgctattgtttgtttaaaattattttctctcagaa |
5672639 |
T |
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