View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_24 (Length: 416)
Name: NF6178_high_24
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 1238230 - 1238629
Alignment:
| Q |
1 |
aaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagtgtatca |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||| |||||||| |
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| T |
1238230 |
aaaagagagataatgaattaatcttaccgatgatcaatccaattcctcactgtttggtaaaaatcaatggtgacaaatcgattaagcacacggtgtatca |
1238329 |
T |
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| Q |
101 |
tagaaatgaactcgacctttgtacacatttcaactccatgccgagccataatatgcgcaatctaattaacgagaaaaccaacgttattttttcaacaacn |
200 |
Q |
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||||||| |||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1238330 |
tagaaatcaactcgacctttgtacgcctttcacagccatgccgtgccataatatgcgcaatctaattaacgagaaaaccaacgttattttttcaacaaaa |
1238429 |
T |
|
| Q |
201 |
nnnnnnntaaa--ctcaagattcacaatgcaaccgcaactgcaacaaggagttatataaaggaagatgatcaattacctcatgtgcaagcatagttgcta |
298 |
Q |
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| T |
1238430 |
aaaaaaaaaaaaactcaagattcacaatgcaaccgcaactgcaacaaggagttatataaaggaagatgatcaattacctcatgtgcaagcatagttgcta |
1238529 |
T |
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| Q |
299 |
actctacatcacttggatgaagctcaatgaaagcagtggatgcaataatcttccctcccggacaaactaaagcaggaaaataacgaacagggacaccagt |
398 |
Q |
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| T |
1238530 |
actctacatcacttggatgaagctcaatgaaagcagtggatgcaataatcttccctcccggacaaactaaagcaggaaaataacgaacagggacaccagt |
1238629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 1174484 - 1174085
Alignment:
| Q |
1 |
aaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagtgtatca |
100 |
Q |
| |
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| T |
1174484 |
aaaagagagataatgaattaatcttaccgtcgattcatccaattcatcgctgtttggtaaaaatcaatggtgacaaatcaattaagcacatggtctatca |
1174385 |
T |
|
| Q |
101 |
tagaaatgaactcgacctttgtacacatttcaactccatgccgagccataatatgcgcaatctaattaacgagaaaaccaacgttattttttcaacaacn |
200 |
Q |
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|| |||| | || || || | | ||||| || || ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
1174384 |
tacaaatcagaaagaactctgaccgcctttcacaaccgtgatgagccataatatgtgcaatctaattaacgagaaaaccgacattattttttcaacaaca |
1174285 |
T |
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| Q |
201 |
nnnnnnntaaac--tcaagattcacaatgcaaccgcaactgcaacaaggagttatataaaggaagatgatcaattacctcatgtgcaagcatagttgcta |
298 |
Q |
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||| ||||||||||||||||||| |||||||| |||| | |||||| ||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
1174284 |
aaaaagagaaagagtcaagattcacaatgcaactgcaactgccacaatgtgttatacaaaagaagatgatgaattacctcatgtgcaagcatagttgcta |
1174185 |
T |
|
| Q |
299 |
actctacatcacttggatgaagctcaatgaaagcagtggatgcaataatcttccctcccggacaaactaaagcaggaaaataacgaacagggacaccagt |
398 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||||||||| |
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| T |
1174184 |
actctacatcagttggatgaagctcaatgaaagtagtggatgcaataatcttcccacccggacaaactaaagaaggaaaagaagtaacagggacaccagt |
1174085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 10173993 - 10174152
Alignment:
| Q |
1 |
aaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagtgtatca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10173993 |
aaaagagagataatgacttaatcttaccgatgactaatccaattccttactgtttcgtaaaaatcaatgaggacaaatagattaagcacacagtctatca |
10174092 |
T |
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| Q |
101 |
tagaaatgaactcgacctttgtacacatttcaactccatgccgagccataatatgcgcaa |
160 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10174093 |
tagaaatcaactcgacctttgtacacatttcaactccatgccgagccataatatgcgcaa |
10174152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 10174152 - 10174250
Alignment:
| Q |
274 |
acctcatgtgcaagcatagttgctaactctacatcacttggatgaagctcaatgaaagcagtggatgcaataatcttccctcccggacaaactaaagca |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
10174152 |
acctcatgtgcaagcatagttgctaactctacatcacttgaatgaagctcaatgagagcagtggatgcaataatcttccctcccgagcaaactatagca |
10174250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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