View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_high_25 (Length: 411)

Name: NF6178_high_25
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_high_25
NF6178_high_25
[»] chr1 (2 HSPs)
chr1 (61-314)||(26938479-26938727)
chr1 (359-402)||(26938422-26938465)
[»] chr6 (1 HSPs)
chr6 (111-314)||(19814851-19815042)
[»] chr5 (5 HSPs)
chr5 (194-314)||(14692359-14692475)
chr5 (205-314)||(14685117-14685229)
chr5 (93-152)||(14693015-14693074)
chr5 (360-402)||(14692271-14692313)
chr5 (63-120)||(14685247-14685304)
[»] chr4 (1 HSPs)
chr4 (61-150)||(26759134-26759223)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 61 - 314
Target Start/End: Complemental strand, 26938727 - 26938479
Alignment:
Q  61 aaaaataagagtatatggtacatgcatggttagcacaaaagacttggattaagaaccttataaacatgagctcataagactagttcaaaagttagtg--g 158  Q
    |||||||||||| || |||| || ||| |||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||| |||||||||||  |    
T  26938727 aaaaataagagtgtacggtaaatacatagttagcacaaaagacttgaattaagaaggttataaacatgagctcaaaagactagttgaaaagttagtgtgg 26938628  T
Q  159 tgttcatgataatcataaatagaacatggttagcagttagcacaaaagacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaa 258  Q
    ||||||||||||| ||||||||||| ||||||||||       |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  26938627 tgttcatgataatgataaatagaacgtggttagcag-------aaaagacttaaagaacctaataaatatgagctgaactatggttccataccgacaaaa 26938535  T
Q  259 gaaaatctcacatcagacaaacacaagtaaaagtatatacaagcatatggttttgc 314  Q
    ||||||||| |||| |||||| |||||||||||| ||||||| |||||||||||||    
T  26938534 gaaaatctctcatcggacaaagacaagtaaaagtgtatacaaacatatggttttgc 26938479  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 26938465 - 26938422
Alignment:
Q  359 cgagcatatggttatgatacatgagcaactcaacatagaattat 402  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  26938465 cgagcatatggttatgatacatgagcaactcaacataaaattat 26938422  T

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Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 111 - 314
Target Start/End: Original strand, 19814851 - 19815042
Alignment:
Q  111 aagaaccttataaacatgagctcataagactagttcaaaagttagtg--gtgttcatgataatcataaatagaacatggttagcagttagcacaaaagac 208  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||       ||||||||||||||||       || ||||    
T  19814851 aagaagcttataaacatgagctcaaaagactagttgaaaagttagtgtggtgttcatgataat-------agaacatggttagcag-------aatagac 19814936  T
Q  209 ttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagtatatacaagcatatgg 308  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||| ||| ||| |||||||||||| ||||||| |||||||    
T  19814937 ttaaagaacctaataaacatgagctgaactatggttccattccgacaaaagaaaatctctcattagataaagacaagtaaaagtgtatacaaacatatgg 19815036  T

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Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 14692475 - 14692359
Alignment:
Q  194 gttagcacaaaagacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaacacaagtaaaagta 293  Q
    ||||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||     
T  14692475 gttagcacaaaagacttaaa----ctaataaacatgagctgaactatggttccatacagacaaaagaaaatttcacatcagacaaagacaagtaaaagtg 14692380  T
Q  294 tatacaagcatatggttttgc 314  Q
    |||||||||||||||||||||    
T  14692379 tatacaagcatatggttttgc 14692359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 14685229 - 14685117
Alignment:
Q  205 agacttaaagaaccttataaacatgagctgaactatggttccatacagacaaaagaaaatctcacatcagacaaac----acaagtaaaagtatatacaa 300  Q
    ||||||||||||| |||||| |||||||| |  |||||||| || |||||||||||||||||||||||| ||||||    ||| |||||||| |||| ||    
T  14685229 agacttaaagaacgttataa-catgagctcagttatggttctatgcagacaaaagaaaatctcacatcaaacaaacaaagacatgtaaaagtgtatataa 14685131  T
Q  301 gcatatggttttgc 314  Q
    ||||||||||||||    
T  14685130 gcatatggttttgc 14685117  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 14693074 - 14693015
Alignment:
Q  93 gcacaaaagacttggattaagaaccttataaacatgagctcataagactagttcaaaagt 152  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||||    
T  14693074 gcacaaaagacttgaattaagaagcttataaacatgagctcaaaagactagtttaaaagt 14693015  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 14692313 - 14692271
Alignment:
Q  360 gagcatatggttatgatacatgagcaactcaacatagaattat 402  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  14692313 gagcatatgattatgatacatgatcaactcaacatagaattat 14692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 14685304 - 14685247
Alignment:
Q  63 aaataagagtatatggtacatgcatggttagcacaaaagacttggattaagaacctta 120  Q
    ||||||||| ||||||||||| ||||||||| ||||||| |||  |||||||||||||    
T  14685304 aaataagagcatatggtacatacatggttagtacaaaaggcttaaattaagaacctta 14685247  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 26759134 - 26759223
Alignment:
Q  61 aaaaataagagtatatggtacatgcatggttagcacaaaagacttggattaagaaccttataaacatgagctcataagactagttcaaaa 150  Q
    |||||||||||||||||||| || |||||| ||||||||||||||| ||||||||  ||| ||||||||||||| |||||||||| ||||    
T  26759134 aaaaataagagtatatggtaaatacatggtaagcacaaaagacttgaattaagaaggttaaaaacatgagctcaaaagactagttgaaaa 26759223  T

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