View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6178_high_33 (Length: 384)
Name: NF6178_high_33
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 3748102 - 3747741
Alignment:
| Q |
18 |
cctataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgct |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3748102 |
cctataccagatatgtttctagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgct |
3748003 |
T |
|
| Q |
118 |
catcattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3748002 |
catcattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaa |
3747903 |
T |
|
| Q |
218 |
caacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatgga |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747902 |
caacaaattccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatgga |
3747803 |
T |
|
| Q |
318 |
aaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgt |
379 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747802 |
aaactatctgaaaaatatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgt |
3747741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 5887291 - 5887640
Alignment:
| Q |
19 |
ctataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctc |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||| || || |||||| | ||||| |
|
|
| T |
5887291 |
ctataccagatatgtttccaacttcttgtgttgcaagctctttgaacttccatggaaatctcttacatgggccgattcccaagtctctctccaactgctc |
5887390 |
T |
|
| Q |
119 |
atcattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaac |
218 |
Q |
| |
|
||| |||||| ||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5887391 |
atcgttaaaggtattggacattggatcaaatcaaattgttggtggttttccatgctttttgaaaaacataccaacacttagtgtcttggttttgcgaaac |
5887490 |
T |
|
| Q |
219 |
aacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaa |
318 |
Q |
| |
|
|| |||| ||||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887491 |
aataaatttcatggttccatagaatgttcagattctctagaaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaa |
5887590 |
T |
|
| Q |
319 |
aactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaa |
368 |
Q |
| |
|
|| || | ||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5887591 |
aaataccagaaaaatatttcacaacatgggaaagaatgatgcaagatgaa |
5887640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 5857250 - 5856932
Alignment:
| Q |
21 |
ataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctcat |
120 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
5857250 |
ataccagatatgtttccaccatcttgtgccttaaggactttgaacttccatgaaaatctcttacatgggccaattcccaagtctctctcccattgctcat |
5857151 |
T |
|
| Q |
121 |
cattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaacaa |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5857150 |
cattaaaggtattggatattggatcaaatcaaattgttggtggttatccatgcttcgtgaagaatataccaacacttagtgtattggttttgcggaacaa |
5857051 |
T |
|
| Q |
221 |
caaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaa |
320 |
Q |
| |
|
|||| ||||||||| || ||||||||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5857050 |
caaacttcatggttccttagaatgttcacattcactagaaaataagccgtggaaaatgattcaaattgtcgacattgctttcaacaatttcaatggaaaa |
5856951 |
T |
|
| Q |
321 |
ctatctgaaaactatttca |
339 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
5856950 |
ctacttgaaaagtatttca |
5856932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 5896138 - 5896488
Alignment:
| Q |
21 |
ataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctcat |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
5896138 |
ataccagatatgtttccaacttcttgtgttgcaagctctttgaacttccatggaaatctcttacatgggccaattcccaagtccctctcccactgctcat |
5896237 |
T |
|
| Q |
121 |
cattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaacaa |
220 |
Q |
| |
|
| |||||| ||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5896238 |
cgttaaagctattggacattggatcaaatcaaatagttggtggttttccatgcttcgtgaagaatataccaacacttagtgtattggttttgcggaacaa |
5896337 |
T |
|
| Q |
221 |
caaataccatggttccgtaaaatgttca---ctttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatgga |
317 |
Q |
| |
|
|||| ||||||||| || |||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5896338 |
caaacttcatggttccatagaatgttcacatcattcactagaaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaacgga |
5896437 |
T |
|
| Q |
318 |
aaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaa |
368 |
Q |
| |
|
|||||| ||||| || || || ||||||||| ||||| | |||||||| |
|
|
| T |
5896438 |
aaactacaagaaaaatactttgcaacatgggaaaaaatgaagaatgatgaa |
5896488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 5849075 - 5849421
Alignment:
| Q |
19 |
ctataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctc |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| ||||| |
|
|
| T |
5849075 |
ctataccagatacgtttccaacttcttgtgttgt---------gaacttccatgcaaatctcttacatgggccgattcccaagtctctctcccactgctc |
5849165 |
T |
|
| Q |
119 |
atcattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaac |
218 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5849166 |
atcattaaaggtattggacattggatcaaatcaaattgttggtggttttccatgctttttgaaacacataccaacacttagtgtcttggttttgcggaac |
5849265 |
T |
|
| Q |
219 |
aacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaa |
318 |
Q |
| |
|
|| | || ||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5849266 |
aatagattgcatggttccatagaatgttcacattcactagaaaataagccttggaaaatgattcaaattgtggacattgctttgaacaatttcaatggaa |
5849365 |
T |
|
| Q |
319 |
aactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgat |
374 |
Q |
| |
|
|| || | ||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
5849366 |
aaataccagaaaaatatttcatgacatgggaaagaatgatgcatgatgaaaatgat |
5849421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 5563914 - 5563573
Alignment:
| Q |
18 |
cctataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgct |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||| |||||||| || || || ||||| || ||| |
|
|
| T |
5563914 |
cctataccagatatgtttccaacttcttgtgttgcaagtactttgaacttccatggaaatctcttacaagggccaatacctaagtctctctcacactgca |
5563815 |
T |
|
| Q |
118 |
catcattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaa |
217 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5563814 |
catcattaaaggtattggacattggatcaaatcaaattgttggtggttttccatgctttttgaaacacataccaacacttagtgtcttggttttgcggaa |
5563715 |
T |
|
| Q |
218 |
caacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatgga |
317 |
Q |
| |
|
||| | || ||||||||| || |||||||||| ||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||| |||| |
|
|
| T |
5563714 |
caatagattgcatggttccatagaatgttcactctcactggcaaaaaagccttggaaaaggattcaaattttggacatggctttcaacaatttcagtgga |
5563615 |
T |
|
| Q |
318 |
aaactatctgaaaactatttcacagcatgggaaagaatgatg |
359 |
Q |
| |
|
|||||| ||||| | ||||||| ||||||||||||||||| |
|
|
| T |
5563614 |
aaactacctgaattttttttcacaacatgggaaagaatgatg |
5563573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 5558117 - 5557759
Alignment:
| Q |
21 |
ataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctcat |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||| || || | ||||||||| | |
|
|
| T |
5558117 |
ataccagatatgtttccaacttcttgtggtataagcactttgaacttccatggaaatctcttacatgggccaattccaaagtctcttttccattgctctt |
5558018 |
T |
|
| Q |
121 |
cattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaacaa |
220 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||| ||||| | ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5558017 |
taataaaagtattggacattggatcaaatcaaatttttggtggctttccatgctttttgaaaaacataccaacacttagtgttttggttttgcggaacaa |
5557918 |
T |
|
| Q |
221 |
caaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaa |
320 |
Q |
| |
|
|| || |||||||| || ||||||||| |||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |
|
|
| T |
5557917 |
catattgcatggttcaatagaatgttcacattcactcgaaaataagccttggaaaatgattcaaattgttgatattgctttcaacaatttcaatgggaag |
5557818 |
T |
|
| Q |
321 |
ctatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgt |
379 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||||||| || ||| ||| ||||| |||| |
|
|
| T |
5557817 |
ctacctgaaaaatatttcacatcatgggaaagaatgaagcgtgaagaaaatgataatgt |
5557759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 5612714 - 5612368
Alignment:
| Q |
22 |
taccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctcatc |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| || || || ||||| |||||||| |
|
|
| T |
5612714 |
taccagatatgtttccaacttcttgtgttgtaagctctttgaacttccatggaaatctcttacatggggcaattcccaagtctctatcccactgctcatc |
5612615 |
T |
|
| Q |
122 |
attaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaacaac |
221 |
Q |
| |
|
|||| | ||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
5612614 |
attacgggtattggacattggatcaaatcaaattgttggtggttttccatgctttttgaaaaacatacaaacacttagcgtcttggtgttgcggaacaac |
5612515 |
T |
|
| Q |
222 |
aaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaac |
321 |
Q |
| |
|
|||| ||||||||| || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
5612514 |
aaattgcatggttccatagaatgtacacactcactagaaaataagccttggaaaatgattcaaattgtggacattgcattcaatgatttcaacggaaaac |
5612415 |
T |
|
| Q |
322 |
tatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaa |
368 |
Q |
| |
|
|| | |||| | |||||| ||||||||| ||||||||| |||||| |
|
|
| T |
5612414 |
taccagaaacattcttcacaacatgggaaaaaatgatgcacgatgaa |
5612368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 5604599 - 5604250
Alignment:
| Q |
22 |
taccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctcatc |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||||||| |
|
|
| T |
5604599 |
taccagatatgtttccaacttcttgtgttgtaaacactttgaacttccatggaaatctcttacatgggccaattcccaagtctctctcccactgctcatc |
5604500 |
T |
|
| Q |
122 |
attaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaacaac |
221 |
Q |
| |
|
|||||| |||| || |||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
5604499 |
attaaatgtattagacattggatcaaatcaaatggttgatcgttttccatgcttcttaacgaagataccaacactcagtgtattggttttgtggaacaac |
5604400 |
T |
|
| Q |
222 |
aaataccatggttccgtaaaatgttcactttcactagcaaataagcc---ttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaa |
318 |
Q |
| |
|
|||| |||||||| || ||||||||| || | ||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5604399 |
aaattttatggttccatagaatgttcacatttagtagaaaacaagcctaattggaaaatgattcaaattgtggacattgcttccaacaatttcaatggaa |
5604300 |
T |
|
| Q |
319 |
aactatctgaaaactatttcac-agcatgggaaagaatgatgcatgatgaa |
368 |
Q |
| |
|
||||| |||||| |||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
5604299 |
aactacttgaaaagattttcacgagc-tgggacagaatgaagcatgatgaa |
5604250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 5854054 - 5854410
Alignment:
| Q |
19 |
ctataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctcttacatgggccaattccaaaatccctctcccattgctc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||| || ||| ||||| |||||||||||| |||| || || || ||||| ||||| |
|
|
| T |
5854054 |
ctataccagatatgtttcctgcttcttgtgttgcgaggactttgaacatcaatgggaatcacttacatgggccgcttccgaagtctctttcccactgctc |
5854153 |
T |
|
| Q |
119 |
atcattaaagatat--tggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcgga |
216 |
Q |
| |
|
|||||||||| | | | || ||||||||||||||||| ||||| | ||||| ||||| || || ||||||| || |||||||||||||||||||||| |
|
|
| T |
5854154 |
atcattaaaggtgtgttagacattggatcaaatcaaatttttggtggctttccttgctttttaaaaaacatacaaaatcttagtgtcttggttttgcgga |
5854253 |
T |
|
| Q |
217 |
acaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatgg |
316 |
Q |
| |
|
| ||||| | ||||| ||| | ||||||||| ||||| |||| |||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5854254 |
ataacaagtttcatggatccatggaatgttcacattcacaagcagataagcattagaaaatgattcagattgtggacattgctttcaacaatttcaatgg |
5854353 |
T |
|
| Q |
317 |
aaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatg |
375 |
Q |
| |
|
||||||| ||||| || ||| || ||||||| ||||| |||| |||||| |||||| |
|
|
| T |
5854354 |
aaaactacaagaaaaatacttcgcaacatgggatagaat--tgcaagatgaagatgatg |
5854410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 316
Target Start/End: Complemental strand, 5552265 - 5552057
Alignment:
| Q |
108 |
tcccattgctcatcattaaagatattggatattggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttgg |
207 |
Q |
| |
|
||||| ||||||||||||||| | || || |||||||||| ||||| || || | |||||||| || || || |||||||||| |||||||| |||| |
|
|
| T |
5552265 |
tcccactgctcatcattaaaggtgttagacattggatcaacccaaattctttgtggctttccatgttttttaaaatacataccaactcttagtgtattgg |
5552166 |
T |
|
| Q |
208 |
ttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaa |
307 |
Q |
| |
|
|||| ||||||||||| | ||||| || || ||||||||| ||||| |||| |||||| ||||||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
5552165 |
ttttacggaacaacaagtttcatggaaccatagaatgttcacattcacaagcagataagcattggaaaatgattcagattgtggacatttcttgcaacaa |
5552066 |
T |
|
| Q |
308 |
tttcaatgg |
316 |
Q |
| |
|
||||||||| |
|
|
| T |
5552065 |
tttcaatgg |
5552057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 6031135 - 6031195
Alignment:
| Q |
21 |
ataccagatatgtttccagcttcttgtgttgtaaggactttgaacttccatgagaatctct |
81 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
6031135 |
ataccagatgtgttttcagcttcttgtgctgtaaggactttgaacttccatgcaaatctct |
6031195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 5552325 - 5552284
Alignment:
| Q |
19 |
ctataccagatatgtttccagcttcttgtgttgtaaggactt |
60 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5552325 |
ctataccagatatgtttcctgcttcttgtgttgtaaggactt |
5552284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 339
Target Start/End: Complemental strand, 1482213 - 1482019
Alignment:
| Q |
138 |
attggatcaaatcaaatggttggtcgttttccatgcttcttgaagaacataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccg |
237 |
Q |
| |
|
|||||| ||||||| || |||||| | ||||||||||| ||||||||||||| |||||||||||| | || | || |||||||||| |||||| || |
|
|
| T |
1482213 |
attggaacaaatcagattgttggt-gatttccatgctttctgaagaacataccgacacttagtgtcctagtactacgaaacaacaaatttcatggtacct |
1482115 |
T |
|
| Q |
238 |
taaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaactattt |
337 |
Q |
| |
|
| ||| |||| |||||| || || ||| ||||||||||||||||||| ||||||||||||||||| | ||| || ||| | ||||| ||||| |
|
|
| T |
1482114 |
tggtatg------ttcaaaagcaaaaaatccatggcaaatgattcaaattgtggatattgctttcaacaattttagtggtaagctaccagaaaaatattt |
1482021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University