View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_37 (Length: 379)
Name: NF6178_high_37
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 168 - 372
Target Start/End: Original strand, 40606454 - 40606656
Alignment:
| Q |
168 |
ttgatgtgtatgtctaatattgtgttcaatgcgaccatacaagtattttccatgctatattaaccacttgctgatccaatatgtgtaactgttctaacct |
267 |
Q |
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| T |
40606454 |
ttgatgtgtatgtctaatattgtgttcaatgcgaccatacaagtattttccatgctatg--aaccacttgctgatccaatatgtgtaactgttctaacct |
40606551 |
T |
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| Q |
268 |
tctcattgttcgtaaatctaaatctaaccacgtttgagttgnnnnnnngcgttggactaaaccaatttgtattgagtctaaccgaactaaaccaagttca |
367 |
Q |
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| T |
40606552 |
tctcattgttcgtaaatctaaatctaaccgcgtttgagttgaaaaaaagcgttggactaaaccaatttgtattgagtctaaccgaactaaaccaagttca |
40606651 |
T |
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| Q |
368 |
tctca |
372 |
Q |
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|||| |
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| T |
40606652 |
actca |
40606656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 40606304 - 40606375
Alignment:
| Q |
19 |
gtaacaccatgctcatgagaggaagttttgggtgctcacaactattcaagtataacatttagacacactcac |
90 |
Q |
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| T |
40606304 |
gtaacaccatgcccatgagaggaagttttgggtgctcacaactattcaagtataacatttagacacactcac |
40606375 |
T |
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