View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_high_38 (Length: 373)

Name: NF6178_high_38
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_high_38
NF6178_high_38
[»] chr5 (13 HSPs)
chr5 (20-245)||(40403171-40403396)
chr5 (47-198)||(40256675-40256826)
chr5 (47-161)||(40326681-40326795)
chr5 (234-316)||(40409199-40409281)
chr5 (234-315)||(40597521-40597602)
chr5 (75-167)||(39619438-39619530)
chr5 (138-198)||(40303753-40303813)
chr5 (236-315)||(40334098-40334177)
chr5 (236-315)||(40377131-40377210)
chr5 (236-315)||(40387376-40387455)
chr5 (89-198)||(40406608-40406717)
chr5 (234-302)||(40277990-40278058)
chr5 (40-108)||(40283806-40283874)
[»] chr4 (3 HSPs)
chr4 (64-147)||(7762966-7763049)
chr4 (75-155)||(7755524-7755604)
chr4 (83-159)||(7839654-7839730)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 40403396 - 40403171
Alignment:
Q  20 tacccgtatttcaagtgccatccttttaagttagcgacttcaaacaaagctaatctccatgctttcaccttctcagagtcctttccaaatttattttcat 119  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||    
T  40403396 tacccatatttcaagtgccgtccttttaagtttgcgacttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcat 40403297  T
Q  120 gttcattcatagctttttcataactatttttctgatgtcttatatctgttggttccactttgtaaaaaataggccaaacaagtttgtttctggtcttcat 219  Q
    |||||| |||||||||||| |||||||||||| ||||||||||   ||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  40403296 gttcatccatagctttttcgtaactatttttcagatgtcttatggttgttggttccattttgtaaaaaataggccaaacaagttggtttctggtcttcat 40403197  T
Q  220 aaagtcaaggatggtgacaagttcat 245  Q
    ||||||||||||||||||||||||||    
T  40403196 aaagtcaaggatggtgacaagttcat 40403171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 40256675 - 40256826
Alignment:
Q  47 aagttagcgacttcaaacaaagctaatctccatgctttcaccttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactat 146  Q
    ||||| || |||| |||||||||| ||||||||  ||  | ||||||| | || |||||||| ||||||||||||||| |||| |||||  |||||||||    
T  40256675 aagttggcaacttgaaacaaagctgatctccatttttgtatcttctcataatcatttccaaaattattttcatgttcagtcattgctttaccataactat 40256774  T
Q  147 ttttctgatgtcttatatctgttggttccactttgtaaaaaataggccaaac 198  Q
    | |||||||  |||| ||||| ||| ||||||||||||||||| ||||||||    
T  40256775 tcttctgataccttacatctgatggctccactttgtaaaaaattggccaaac 40256826  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 40326795 - 40326681
Alignment:
Q  47 aagttagcgacttcaaacaaagctaatctccatgctttcaccttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactat 146  Q
    |||||||| |||||| | |||||| | ||||||   |||||||| |||||||| |||||||| |  | |||||| | | |||| |||||| |||||||||    
T  40326795 aagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactat 40326696  T
Q  147 ttttctgatgtctta 161  Q
    || ||||||||||||    
T  40326695 ttctctgatgtctta 40326681  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 40409281 - 40409199
Alignment:
Q  234 tgacaagttcatcaagagacactgaggaatttgcatagttttcagagagaataatgattgaaagccttgatttttcaattgct 316  Q
    ||||||||||||||||| ||  || ||||| | || |||||||||| | || ||  |||||||||||||||||||||||||||    
T  40409281 tgacaagttcatcaagacaccatgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgct 40409199  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 40597521 - 40597602
Alignment:
Q  234 tgacaagttcatcaagagacactgaggaatttgcatagttttcagagagaataatgattgaaagccttgatttttcaattgc 315  Q
    |||||||||| |||||| ||  ||||||||| |||||||||||||| | ||| || || || |||||||||| |||||||||    
T  40597521 tgacaagttcttcaagacaccatgaggaattcgcatagttttcagacaaaatgataatcgacagccttgattcttcaattgc 40597602  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 39619530 - 39619438
Alignment:
Q  75 tccatgctttcaccttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactatttttctgatgtcttatatctg 167  Q
    |||||||||| || || |||||||| |||||||| |||   ||||| |||  ||| ||||| || |||||||||||||||||||||| |||||    
T  39619530 tccatgcttttacattttcagagtcttttccaaacttaacctcatgatcaaccatggctttctcgtaactatttttctgatgtcttacatctg 39619438  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 40303813 - 40303753
Alignment:
Q  138 cataactatttttctgatgtcttatatctgttggttccactttgtaaaaaataggccaaac 198  Q
    ||||||||||| ||  ||||||||||||||  |||| |||||||||||| |||||||||||    
T  40303813 cataactatttctcatatgtcttatatctgaaggtttcactttgtaaaagataggccaaac 40303753  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 40334177 - 40334098
Alignment:
Q  236 acaagttcatcaagagacactgaggaatttgcatagttttcagagagaataatgattgaaagccttgatttttcaattgc 315  Q
    ||||||||||||||| ||  || ||||||||||||||||||||| | || ||| || ||||| ||||||  |||||||||    
T  40334177 acaagttcatcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgc 40334098  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 40377210 - 40377131
Alignment:
Q  236 acaagttcatcaagagacactgaggaatttgcatagttttcagagagaataatgattgaaagccttgatttttcaattgc 315  Q
    ||||||||||||||| ||  || ||||||||||||||||||||| | || ||| |||||||| |||| |  |||||||||    
T  40377210 acaagttcatcaagacaccatgtggaatttgcatagttttcagacaaaacaataattgaaagtcttgttgcttcaattgc 40377131  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 40387455 - 40387376
Alignment:
Q  236 acaagttcatcaagagacactgaggaatttgcatagttttcagagagaataatgattgaaagccttgatttttcaattgc 315  Q
    ||||||||||||||| ||  || ||||||||||||||||||||| | || ||| || ||||| ||||||  |||||||||    
T  40387455 acaagttcatcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgc 40387376  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 40406717 - 40406608
Alignment:
Q  89 ttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactatttttctgatgtcttatatctgttggttccactttgtaaaaaa 188  Q
    |||||||| | |||||||||| ||| ||||||| |  |||| |||||  ||||||| ||| | ||||  |||| ||||| | |||| | |||||||||||    
T  40406717 ttctcagactgctttccaaatctatcttcatgtgctgtcatggctttgccataactttttgtttgattgcttacatctgattgttctattttgtaaaaaa 40406618  T
Q  189 taggccaaac 198  Q
    ||||||||||    
T  40406617 taggccaaac 40406608  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 40278058 - 40277990
Alignment:
Q  234 tgacaagttcatcaagagacactgaggaatttgcatagttttcagagagaataatgattgaaagccttg 302  Q
    ||||||||||||||||| ||  || |||| |||||||||||||||| | || ||  |||||||||||||    
T  40278058 tgacaagttcatcaagacaccatgtggaacttgcatagttttcagacaaaacaacaattgaaagccttg 40277990  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 40283874 - 40283806
Alignment:
Q  40 tccttttaagttagcgacttcaaacaaagctaatctccatgctttcaccttctcagagtcctttccaaa 108  Q
    |||||| |||||||| |||||| | |||||| | |||||| | || |||||||||||||| ||||||||    
T  40283874 tcctttcaagttagcaacttcagataaagctgacctccattcctttaccttctcagagtcatttccaaa 40283806  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 7762966 - 7763049
Alignment:
Q  64 caaagctaatctccatgctttcaccttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactatt 147  Q
    |||||| || |||||||||||||||||||| || |||||||||||| ||||||||||||   |||| ||  |||||||||||||    
T  7762966 caaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcataactatt 7763049  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 7755524 - 7755604
Alignment:
Q  75 tccatgctttcaccttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactatttttctgat 155  Q
    ||||||||||||||||||| || ||| |||||||| | ||||||||||   | ||||| | ||||||||||||||||||||    
T  7755524 tccatgctttcaccttctccgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctgat 7755604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 7839654 - 7839730
Alignment:
Q  83 ttcaccttctcagagtcctttccaaatttattttcatgttcattcatagctttttcataactatttttctgatgtct 159  Q
    ||||||||||| || |||||||||||| | |||||||||| | |||| ||  ||||||| || ||| ||||||||||    
T  7839654 ttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcatagctctttctctgatgtct 7839730  T

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