View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_39 (Length: 370)
Name: NF6178_high_39
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 48442074 - 48442414
Alignment:
| Q |
13 |
aaaattaggaaataggtcttacgaataacattgcattctaaaagggagagtacctatatagcctagacgtctaaaatggaagtacccaattctgaatggg |
112 |
Q |
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| T |
48442074 |
aaaattacgaaataggtcttacgaataacattgcattctaaaagggagagtacctatatagcctagacgtctaaaatggaagtacccaattcttaatggg |
48442173 |
T |
|
| Q |
113 |
caagtaccattaagcaccaccactggggaagactaagataagtttttggatgtgtgaatatcgtgtttgtattaattaaactttagggctatttggattg |
212 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48442174 |
caagtaccattaagcaccaccaatggggaagactaagataagtttttggatatgtgaatatcgtgtttgtattaattaaactttagagctatttggattg |
48442273 |
T |
|
| Q |
213 |
acttatttaagtttatctacttgcagtgttacttaagagaatgttaggaactggaagagctaataaaaatagcttataacaagttcttaaattattttca |
312 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48442274 |
acttacttaagtttatctacttgcagtgttacttgagagaatgttaggaactggaagagctaataaaaatagcttatgacaagttcttaaattattttca |
48442373 |
T |
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| Q |
313 |
taagttcttcaggatagcttataatttatatacgaaaacaa |
353 |
Q |
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| T |
48442374 |
taagttcttcaggatagcttataatttatatacgaaaacaa |
48442414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 43393690 - 43393726
Alignment:
| Q |
201 |
ctatttggattgacttatttaagtttatctacttgca |
237 |
Q |
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| T |
43393690 |
ctatttggattgacttatttaagcttatctacttgca |
43393726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 32197764 - 32197734
Alignment:
| Q |
304 |
ttattttcataagttcttcaggatagcttat |
334 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32197764 |
ttattttcataagttcttcaggatagcttat |
32197734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 45769770 - 45769800
Alignment:
| Q |
304 |
ttattttcataagttcttcaggatagcttat |
334 |
Q |
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| T |
45769770 |
ttattttcataagttcttcaggatagcttat |
45769800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 51190892 - 51190854
Alignment:
| Q |
304 |
ttattttcataagttcttcaggatagcttataatttata |
342 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
51190892 |
ttattttcataagttcttcaagatagcttataacttata |
51190854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 172494 - 172526
Alignment:
| Q |
204 |
tttggattgacttatttaagtttatctacttgc |
236 |
Q |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
172494 |
tttggattgacttatttgagtttatctacttgc |
172526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 28615483 - 28615454
Alignment:
| Q |
204 |
tttggattgacttatttaagtttatctact |
233 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28615483 |
tttggattgacttatttaagtttatctact |
28615454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 2386579 - 2386607
Alignment:
| Q |
204 |
tttggattgacttatttaagtttatctac |
232 |
Q |
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|
||||||||||||||||||||||||||||| |
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|
| T |
2386579 |
tttggattgacttatttaagtttatctac |
2386607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 43985361 - 43985329
Alignment:
| Q |
201 |
ctatttggattgacttatttaagtttatctact |
233 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
43985361 |
ctatttggatcgacttatttaagtttatctact |
43985329 |
T |
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