View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_46 (Length: 338)
Name: NF6178_high_46
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2549914 - 2549593
Alignment:
| Q |
1 |
tttaaggtttgcgcattattattaaagttatctttatttttattctttaaagaatgctctaatgacaattgttaacannnnnnngaagaaaaaagac--t |
98 |
Q |
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| T |
2549914 |
tttaaggtttgtgcattattattaaagttcttttt-ttttaattctttaaagaatgctctaatgacaattgttaacatttttt-gaagaaaaaagacatt |
2549817 |
T |
|
| Q |
99 |
ttgagacaagtttggtgcaatgtaaaaataaaagttctttagaaataatttttggatggccatacttcaaaatcacatatatgaaagtcgcttcttttgc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2549816 |
ttgagacaagtttggtgcaatgtaaaaataaaagttctttagaaataatttttggatggccatacttcaaaatcacatatatgaaagtcgcttcctttgc |
2549717 |
T |
|
| Q |
199 |
taatgatacttttcttttcttgtctcccatgataagaatctaggaaaggggaagacaatagaagaataaagtaaaatgtagcacaaattaaagcaacttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2549716 |
taatgatacttttcttttcttgtctcccatgataagaatctaggaaaggggaagacaatagaagaataaagtaaaatgtagcacaaattaaagcaacttt |
2549617 |
T |
|
| Q |
299 |
caccctaagatcacatattatttg |
322 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2549616 |
caccctaagatcacatattatttg |
2549593 |
T |
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