View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_47 (Length: 336)
Name: NF6178_high_47
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 14484488 - 14484219
Alignment:
| Q |
35 |
gtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagttt |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14484488 |
gtctgtctgttgtaatccttaaattcaaagagagggttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagttt |
14484389 |
T |
|
| Q |
135 |
actcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaa |
234 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14484388 |
actcggttgtaaacccaaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaa |
14484289 |
T |
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| Q |
235 |
actcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttc |
304 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14484288 |
actcgcaatagattttaatagaattttttatctttcattccatctcaaagttcacattctggtctttttc |
14484219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 129 - 329
Target Start/End: Complemental strand, 11605591 - 11605391
Alignment:
| Q |
129 |
gagtttactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
228 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11605591 |
gagttaactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
11605492 |
T |
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| Q |
229 |
gggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgtttgtttgattttcttc |
328 |
Q |
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| T |
11605491 |
gggtgaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgttagtttgattttgttc |
11605392 |
T |
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| Q |
329 |
g |
329 |
Q |
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| |
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| T |
11605391 |
g |
11605391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 11605667 - 11605582
Alignment:
| Q |
20 |
cattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactc |
105 |
Q |
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| T |
11605667 |
cattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactc |
11605582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 35 - 304
Target Start/End: Original strand, 33735597 - 33735878
Alignment:
| Q |
35 |
gtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagttt |
134 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33735597 |
gtctgtctgttgtattccttaaattcaaagagagggttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagttt |
33735696 |
T |
|
| Q |
135 |
actcagttgtaaacccg------------aattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggat |
222 |
Q |
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|||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33735697 |
actcggttgtaaactcggttgtagactcgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgaagtgaactcgacaaactcggat |
33735796 |
T |
|
| Q |
223 |
agatttgggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttc |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735797 |
agatttgggtaaactcgcaatagattttaatagaattttttatctttcattccatctcaaagttcacattctggtctttttc |
33735878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 22473237 - 22473358
Alignment:
| Q |
183 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
22473237 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaacttgcaatagattttaatagaattttttatctttcattccatctcaa |
22473336 |
T |
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| Q |
283 |
agttcacattctggtctttttc |
304 |
Q |
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||||||||||| |||||||||| |
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| T |
22473337 |
agttcacattccggtctttttc |
22473358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 4197079 - 4197121
Alignment:
| Q |
144 |
taaacccgaattttagtaaatttgaaaatgaaactgagtttac |
186 |
Q |
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||||| |||||||||||||| ||| |||||||||||||||||| |
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| T |
4197079 |
taaactcgaattttagtaaacttggaaatgaaactgagtttac |
4197121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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