View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_49 (Length: 327)
Name: NF6178_high_49
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 46736501 - 46736205
Alignment:
| Q |
21 |
gacagcatctaggaatctctggtctcaaattctgagcaagaatgaaagaaaagttgattataataaataggaaatttagaatgatgtatgaaacttaata |
120 |
Q |
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| T |
46736501 |
gacagcatctaggaatctctggtctcaaattctgagcaagaatgaaagaaaagttgaatataataaataggaaatgtagaatgatgtatgaaacttaata |
46736402 |
T |
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| Q |
121 |
aagtatttcaagagaaaatgtctatggatgaaaataatattaaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataagagta |
220 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736401 |
aagtatttcaagagaaaacatctatggatgaaaataatattaaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataagagta |
46736302 |
T |
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| Q |
221 |
aatttagttaaaaatacttaatatttatggtcatatgatgacagcctaaagagtttactgtgtgatatataggaactaataaatgactaagcctatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736301 |
aatttagttaaaaatacttaatatttatggtcatatgatgaaagcctaaagagtttactgtgtgatatataggaactaataaatgactaagcctatg |
46736205 |
T |
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