View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_50 (Length: 326)
Name: NF6178_high_50
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 2795977 - 2795678
Alignment:
| Q |
18 |
aaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacggtaaatcacttactg |
117 |
Q |
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| T |
2795977 |
aaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacggtaaatcacttactg |
2795878 |
T |
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| Q |
118 |
ctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaatttataacatcaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795877 |
ctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaatttataacatcaaaat |
2795778 |
T |
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| Q |
218 |
tccgatttgcagaagttttatccatattagaaccatattttttaaaattttgtattctgatattctccgttacctcttatgaacgtcaacaaattcatct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795777 |
tccgatttgcagaagttttatccatattagaaccatatttttttaaattttgtattctgatattctccgttacctcttatgaacgtcaacaaattcatct |
2795678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 48671084 - 48670950
Alignment:
| Q |
39 |
agattgatttcacttagaaactatagcagagaaacaaatatt-aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac |
137 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | | |||| |||| ||||||| |||| ||||| || | ||| | |
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| T |
48671084 |
agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc |
48670985 |
T |
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| Q |
138 |
cttcggattgatggagctcgtgccattggggaagc |
172 |
Q |
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| T |
48670984 |
cttcggactgatggagctcgtgccattgaggaagc |
48670950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
| Q |
139 |
ttcggattgatggagctcgtgccattggggaagc |
172 |
Q |
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| T |
16391722 |
ttcggattgatggagctcgtgccattgaggaagc |
16391689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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