View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_53 (Length: 314)
Name: NF6178_high_53
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 48442067 - 48441792
Alignment:
| Q |
29 |
gaggtgctagcttgaagggataaagtgcaaacatattaggcactgaattgaaaacgtggatgttagtgttgtatacacatgagaaccactttaagtacca |
128 |
Q |
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| T |
48442067 |
gaggtgctagcttgaagggataaagtgcaaacatattaggcactgaattgaaaacgtggatgttagtgttgtatacacatgagaaccactttaagtacca |
48441968 |
T |
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| Q |
129 |
aaatatgagttgctccttcaaggatgtttttaaaattttgtggagccttgttctttgtcatgttattagccgaattggagtacacactccttttgttcat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48441967 |
aaatatgagttgctccttcaaggatgtttttaaaattttgtggagccttgttctttgtcatgttattagccgaattggagtacatactccttttgttcat |
48441868 |
T |
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| Q |
229 |
tctttgaggatatnnnnnnngagacatgcatgatcataggatattggtggggatgtgcatgatttgtttgatgatg |
304 |
Q |
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| T |
48441867 |
tctttgaggatataaaaaaagagacatgcatgatcataggatattggtggggatgtgcatgatttgtttgatgatg |
48441792 |
T |
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