View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_54 (Length: 313)
Name: NF6178_high_54
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 52482845 - 52482560
Alignment:
| Q |
11 |
cataggtttagattgaaaacgaaataaactgaactggtagtctggtacactactaggtatcgaactataattaaatattaattatttaaccagtgtgtga |
110 |
Q |
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| T |
52482845 |
cataggtttagattgaaaacgaaataaactgaactggtagtctggtacactactaggtatagaactataattaaatattaattatttaaccagtgtg--a |
52482748 |
T |
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| Q |
111 |
aaacaggacagttaaattatgttgtaataattgtaagaaacttccaactggtagtcataatcaaacctgcagttggtagaagcaattttaagttcaacat |
210 |
Q |
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| T |
52482747 |
aaacaggacagttaaattatgttgtaataattgtaagaaacttccaactggcagtcataatcaaacctgcagttggtaaaagcaattttaagttcaacat |
52482648 |
T |
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| Q |
211 |
gctaaacaccaaaccgtaccaaagtctattagagccagtagttaaactaaatttcttgcatataggtctaattatctttgtgatatat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52482647 |
gctaaacaccaaaccgtaccaaagtctattagagccagtagttaaattaaatttcttgcatataggtctaattatctttgtgttatat |
52482560 |
T |
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