View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6178_high_6 (Length: 573)
Name: NF6178_high_6
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_6 |
 | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 21 - 561
Target Start/End: Complemental strand, 49331518 - 49330976
Alignment:
| Q |
21 |
agtggaataccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctc |
120 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| ||| ||| ||||| || ||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
49331518 |
agtggaagaccgtgataaaggtgttttatatcacgaagagatgacgtacatttagcgaagactaaaagggggaacctctataagtgtcagtgttcttcta |
49331419 |
T |
|
| Q |
121 |
ttccctatccttttaatttgagcattatatttgtgtatatgaattcattatgtgaagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaa |
218 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
49331418 |
ttccctatccttttaatttcagaattatatttgtgtatatgaattcactatgtgaagtgatcgttgtttgactgtgagtttacaatttaccaaaatataa |
49331319 |
T |
|
| Q |
219 |
tctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatataccctatgtttattag |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
49331318 |
tctcaattttcttaattgagattttaccaattcaattttctcccaatcaaagttgaaaattaacttcaaacaattacttcatataccccgtgtttattag |
49331219 |
T |
|
| Q |
319 |
atgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattttataatatgatttaat |
418 |
Q |
| |
|
|||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||| |
|
|
| T |
49331218 |
ctgttagtgggatttgttattaataggtttggtttgtgatagtttagttttgtgatttgtatgtgtgtattgattgttgaattgtataataaaattcaat |
49331119 |
T |
|
| Q |
419 |
agtgagcttctcattcatatttaaatttttattttctttcattgctttattcatatcatcataataaagtataatccgatagtcgtaatcgtattttaac |
518 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
49331118 |
agtgagcttctcattcatatttgaatctttatttcctttcatttctttattcatatcatcataatcaagcataatccgatagtcataatcgtattttaac |
49331019 |
T |
|
| Q |
519 |
tcacactttcgcaaactcttttaaaatcgaaaaacgttattca |
561 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
49331018 |
tcagactttcgcaaactcttttaaaatcaaaaaacattattca |
49330976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 204 - 480
Target Start/End: Original strand, 16887067 - 16887344
Alignment:
| Q |
204 |
tttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatata |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| || ||| || | |||||||| |
|
|
| T |
16887067 |
tttaccaaaatctaatcttaattttcttaattgagattttctcaatttaattttctcgcaatgaaagttgaaagttaacttcaaataaatgattcatata |
16887166 |
T |
|
| Q |
304 |
ccctatgtttattagatgttagtgagatttattg-ttaatagggctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattt |
402 |
Q |
| |
|
|| | |||| ||||| |||||||| ||||||||| ||||||| ||||||| |||| ||||||||| |||| ||||||||||||||| |||| | |
|
|
| T |
16887167 |
ccttgtgttcattagttgttagtgtgatttattgattaatagatttcgtttgagatactttagtttttcaatttaaatgtgtgtattgatttttgaactg |
16887266 |
T |
|
| Q |
403 |
tataatatgatttaatagtgagcttctcattcatatttaaatttttattttctttcattgctttattcatatcatcat |
480 |
Q |
| |
|
||| ||| |||| |||||||| ||||||| |||||||| ||| ||||||| |||||||||||||| | ||||||||| |
|
|
| T |
16887267 |
tattataagattcaatagtgaacttctcactcatatttgaatatttatttcctttcattgctttacttttatcatcat |
16887344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 16884450 - 16884511
Alignment:
| Q |
77 |
gaggacgaaaagggggaacctctataaatgtaggtgttcttctcttccctatccttttaattt |
139 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | |||||| |||||||||||||| ||||||||| |
|
|
| T |
16884450 |
gaggacgaaaagggagaacctttataaatcttggtgtt-ttctcttccctatctttttaattt |
16884511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 17061526 - 17061609
Alignment:
| Q |
55 |
gaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctcttccctatccttttaattt |
139 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||| ||| ||||||||| | | ||||||||| | || |||||||||||||| |
|
|
| T |
17061526 |
gaagagaggatgtacccctattgaggacgaaaaggggaaacatctataaat-ttgatgttcttctttcccttatccttttaattt |
17061609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 553
Target Start/End: Complemental strand, 21487128 - 21486603
Alignment:
| Q |
33 |
tgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctcttccctatcctt |
132 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||| | ||| ||| |||||||||||||| |||||| ||||||| | || |||||||||||| ||||||| |
|
|
| T |
21487128 |
tgataaaggtgttttctatcatgaagagagggcgaacccctagcgaggacgaaaagggagaacctttataaatctttgtattcttctcttccatatcctt |
21487029 |
T |
|
| Q |
133 |
ttaatttgagcattatatttgtgtatatgaattcattatgtgaagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaatctcaattttct |
230 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||| | |||||||||| || ||||| |||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
21487028 |
ttaattttaggattctatttgtgtatatgaattcattgtatgaagtgatcattatttgattgtgaatttacaatttactgaaacctaatctcaattttct |
21486929 |
T |
|
| Q |
231 |
taattgagattttactaattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatataccctatgtttattagatgttagtgaga |
330 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||| | |||| ||||| |||||||| | |
|
|
| T |
21486928 |
taattgagatttcaccgattcaattttctcacaatcaaagttaaaagttaacttcaaacaattacttcatataccttgtgttcattagttgttagtgtta |
21486829 |
T |
|
| Q |
331 |
tttattgttaatagggctcgtttgtgatagtttagttt-tgtgatttgtatgtgtgtattgattaatgaattttataatatgatttaatagtgag--ctt |
427 |
Q |
| |
|
|||||| |||||||| | ||||| |||||||| ||| ||||||| ||||||||||||||| |||||| |||||||||||| ||||||||| ||| |
|
|
| T |
21486828 |
tttattattaataggtttagtttgatatagtttaatttcattgatttgaatgtgtgtattgattgttgaattgtataatatgattcaatagtgagaactt |
21486729 |
T |
|
| Q |
428 |
ctcattcatatttaaatttttattttctttcattgctttattcatatcatcataataaagtataatccgatagtcgtaatcgtattttaactcacacttt |
527 |
Q |
| |
|
||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||||| ||| | ||| | ||| || ||||| |||||||||||||| ||| |
|
|
| T |
21486728 |
ctcattcatatttgaatctatatttcctttcattgctttactcatatcatcataatcaagcacaattcaataatcataatcatattttaactcacatttt |
21486629 |
T |
|
| Q |
528 |
cgcaaactcttttaaaatcgaaaaac |
553 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
21486628 |
ctcaaactcttttaaaatcgaaaaac |
21486603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 365 - 477
Target Start/End: Original strand, 15308646 - 15308758
Alignment:
| Q |
365 |
gttttgtgatttgtatgtgtgtattgattaatgaattttataatatgatttaatagtgagcttctcattcatatttaaatttttattttctttcattgct |
464 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||| ||||||| | || |||||||| |||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
15308646 |
gttttttgatttgaatgtgtgtattgattgttgaattgtataataagcttcaatagtgaacttctcattcatatttaaatctttatttccttttattgct |
15308745 |
T |
|
| Q |
465 |
ttattcatatcat |
477 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
15308746 |
ttactcatatcat |
15308758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 350 - 521
Target Start/End: Complemental strand, 14753156 - 14752987
Alignment:
| Q |
350 |
gtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattttataatatgatttaatagtgagcttctcattcatatttaaattttta |
449 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||||||||| || |||||| ||| ||| |||| |||| ||| |||||||||| ||||| ||||| |
|
|
| T |
14753156 |
gtttgagattgtttagttttgtgatttgaatgtgtgtattgtttgttgaattgtattataagattcaataatgaacttctcattcttatttgaattt--- |
14753060 |
T |
|
| Q |
450 |
ttttcttt-cattgctttattcatatcatcataataaagtataatccgatagtcgtaatcgtattttaactca |
521 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| | ||| | ||||||| | || |||||||||||||||||| |
|
|
| T |
14753059 |
ttttctttacattgcttttttcatgtcatcatattcaagcacaatccgacaatcataatcgtattttaactca |
14752987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 144 - 560
Target Start/End: Complemental strand, 21585660 - 21585244
Alignment:
| Q |
144 |
attatatttgtgtatatgaattcattatgtgaagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagatt |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || | ||| |||||||||||||||||||||| |||||||||||||||||||| |||| | |
|
|
| T |
21585660 |
attatatttgtgtatatgaattcattgtgtgaagtgatcattatatgattgtgagtttacaatttaccaaaacctaatctcaattttcttaat-gagact |
21585562 |
T |
|
| Q |
242 |
ttactaattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatataccctatgtttattagatgttagtgagatttattgttaa |
341 |
Q |
| |
|
| |||| |||||||||||||| |||||||||| |||| || |||||||||||| ||||||| | |||| |||| ||| |||| ||||||||||||| |
|
|
| T |
21585561 |
tcgtcaatttaattttctcacaatcaaagttgaaa-ttaacttcaaacaattacttgatataccttgtgttcgttagttgtgagtgtgatttattgttaa |
21585463 |
T |
|
| Q |
342 |
tagggctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattttataatatgatttaatagtgagcttctcattcatattta |
441 |
Q |
| |
|
|||| | |||| |||||||||||||||||| ||| | || |||||||||| |||||| ||||||| |||| || ||||| |||||||||||| ||| |
|
|
| T |
21585462 |
taggtttggttttagatagtttagttttgtgacttgaacgtatgtattgattgttgaattgtataataagattcaacagtgaacttctcattcatctttg |
21585363 |
T |
|
| Q |
442 |
aatttttattttctttcattgctttattcatatcatcataataaagtataatccgatagtcgtaatcgtattttaactcacactttcgcaaactctttta |
541 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||| || | ||| ||||||| ||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
21585362 |
aatatttatttcctttcattgctttattcatatcatcataatcaaacacaatatgatagtcataatcgtgttttaactcacgctttcacaaactctttta |
21585263 |
T |
|
| Q |
542 |
aaatcgaaaaacgttattc |
560 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
21585262 |
aaattgaaaagcgttattc |
21585244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 4007479 - 4007522
Alignment:
| Q |
350 |
gtttgtgatagtttagttttgtgatttgtatgtgtgtattgatta |
394 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
4007479 |
gtttgagatagtttagttttgtgatttggat-tgtgtattgatta |
4007522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 4012871 - 4012914
Alignment:
| Q |
350 |
gtttgtgatagtttagttttgtgatttgtatgtgtgtattgatta |
394 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
4012871 |
gtttgagatagtttagttttgtgatttggat-tgtgtattgatta |
4012914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 17857032 - 17857084
Alignment:
| Q |
314 |
attagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagt |
366 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||| | ||||| ||||||||||| |
|
|
| T |
17857032 |
attagttgttagtgtgatttgttgttaatagggttggtttgagatagtttagt |
17857084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 8e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 111 - 483
Target Start/End: Original strand, 16722126 - 16722500
Alignment:
| Q |
111 |
tgttcttctcttccctatccttttaatttgagcattatatttgtgtatatgaattcattatgtgaagtgatcgttgtttga--gtgagtttacaatttac |
208 |
Q |
| |
|
|||| ||| ||||||||||| |||||||| ||||||| ||||||||||||||| ||||| || |||||| || | ||||| |||||||||||| |||| |
|
|
| T |
16722126 |
tgtttttcacttccctatccatttaatttcagcattaaatttgtgtatatgaaatcattgtgagaagtggtcatgatttgattgtgagtttacaagttac |
16722225 |
T |
|
| Q |
209 |
caaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatatacccta |
308 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||||| ||| |||||||||| ||| ||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
16722226 |
aaaaacccaatctcaattttcttaattgaaattttaccgattaaattttctcaaaatcaaagttgaaagttaacttcaaacaattacttcatataccttg |
16722325 |
T |
|
| Q |
309 |
tgtttattagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattttataat |
408 |
Q |
| |
|
|||| ||||| | ||||| ||||||||||||||||| | |||| |||| ||||||||||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
16722326 |
tgttcattagtttttagtatgatttattgttaataggtttgatttgagatactttagttttgtgatttgaatgtgtgtattgattgttgaattgtataac |
16722425 |
T |
|
| Q |
409 |
atgatttaatagtgagcttctcattcatatttaaatttttattttctttcattgctttattcatatcatcataat |
483 |
Q |
| |
|
| |||| |||| ||| | | ||||||||||| ||| ||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
16722426 |
aagattcaataatgaacgttgcattcatatttgaatctttatttccattcattgctttattcttatcatcataat |
16722500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 393
Target Start/End: Original strand, 40545716 - 40546022
Alignment:
| Q |
87 |
agggggaacctctataaatgtaggtgttcttctcttccctatccttttaatttgagcattatatttgtgtatatgaattcattatgtgaagtgatcgttg |
186 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||| |||| || |||||||||| |||||||| | || |
|
|
| T |
40545716 |
agggggaacctctataaatctcagtgttcttctcttccatatccttttaatttttgcattataattgt--atctgaattcattgtgtgaagtttttttta |
40545813 |
T |
|
| Q |
187 |
tttga--gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaaatt |
284 |
Q |
| |
|
||||| |||| || || |||| || | |||||||| ||| | |||||||||| | |||||||||| ||||||||| ||||||||||| | || |
|
|
| T |
40545814 |
tttgattgtgatttcactattttacattacctaatctcgattacttcaattgagattcttttaattcaattatctcacaatcgaagttgaaagtaagctt |
40545913 |
T |
|
| Q |
285 |
taaacaattacttcatataccctatgtttattagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgatttgtatgtgt |
384 |
Q |
| |
|
||||||||| |||||||||| | ||| ||||| ||| | || ||||||||||||||||| | ||||| |||| ||| ||||| | ||||| |||||| |
|
|
| T |
40545914 |
taaacaattgattcatataccgtgtgtccattagctgtcaatgtgatttattgttaataggtttggtttgagataattttgttttatcatttgaatgtgt |
40546013 |
T |
|
| Q |
385 |
gtattgatt |
393 |
Q |
| |
|
||||||||| |
|
|
| T |
40546014 |
gtattgatt |
40546022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 29388745 - 29388645
Alignment:
| Q |
21 |
agtggaataccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctc |
120 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||| ||||||||| |||| |||||||| |||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
29388745 |
agtggaagcccgtgatagaagtgttttttatcactaagagaggatgtacccctagtgaggtcgaaaaggggaaacctctataaatgttgatgttcttctc |
29388646 |
T |
|
| Q |
121 |
t |
121 |
Q |
| |
|
| |
|
|
| T |
29388645 |
t |
29388645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 20685268 - 20685216
Alignment:
| Q |
53 |
acgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaat |
105 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||| |||||||||||||| |
|
|
| T |
20685268 |
acgaagagaggacatatccctagtgaggaagaaaagggagaacctctataaat |
20685216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 18450656 - 18450724
Alignment:
| Q |
53 |
acgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctct |
121 |
Q |
| |
|
||||||| |||||||||| || |||||||||| ||||||||||||||||| | ||||| ||||||| |
|
|
| T |
18450656 |
acgaagaaaggacatacccctaacgaggacgaaataggggaacctctataaatttcggtgtccttctct |
18450724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 22471197 - 22471129
Alignment:
| Q |
312 |
ttattagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgatttgtat |
380 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| | |||| ||| ||||||||||| |||||||| |
|
|
| T |
22471197 |
ttattagttgttagtgtgatttattgttaataggtttgatttgagattgtttagttttgcaatttgtat |
22471129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 21 - 392
Target Start/End: Original strand, 22724661 - 22725029
Alignment:
| Q |
21 |
agtggaataccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctc |
120 |
Q |
| |
|
||||||| |||||||||||| |||||||||| || ||||||| |||| ||||||||||||||| || ||||||||||||| |||||||| ||||| |
|
|
| T |
22724661 |
agtggaagaccgtgatagagacattttatatcaagatgagaggatgtacccctagtgaggacgaaaatggcaaacctctataaatctaggtgttattctc |
22724760 |
T |
|
| Q |
121 |
ttccctatccttttaatttgagcattatatttgtgtatatgaattcattatgtgaagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaa |
218 |
Q |
| |
|
||| | |||||||| |||| ||| ||||| || |||||||||||||||| | ||||| ||| || ||||| ||||||| || |||| |||||| |||| |
|
|
| T |
22724761 |
ttcacaatccttttgatttcagc-ttataattatgtatatgaattcattgtatgaagcaatcattatttgattgtgagttcactattttccaaaacctaa |
22724859 |
T |
|
| Q |
219 |
tctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatataccctatgtttattag |
318 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||| | |||| | ||| |
|
|
| T |
22724860 |
tctcaatttcatcaattgaga---tatcaattcaattttctcacaatcaaagttgaaagttaacttcaaacaattgcttcatataccttgtgttca-tag |
22724955 |
T |
|
| Q |
319 |
atgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgat |
392 |
Q |
| |
|
|||||||| ||||||||| |||||| | ||||| ||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
22724956 |
ttgttagtgtgatttattgataatagttttggtttgagatagtttagttttgcaatttgaatgtgtatattgat |
22725029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 17795402 - 17795360
Alignment:
| Q |
77 |
gaggacgaaaagggggaacctctataaatgtaggtgttcttct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
17795402 |
gaggacgaaaagggggaacctctataaatcttggtgttcttct |
17795360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 13256014 - 13255949
Alignment:
| Q |
350 |
gtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattttataatatgattta |
416 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||||||||| |||||| | ||||| |||||| |
|
|
| T |
13256014 |
gtttgagatagtttagttttgtgatttgaat-tgtgtattgattgttgaattctttaataagattta |
13255949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 23649471 - 23649421
Alignment:
| Q |
85 |
aaagggggaacctctataaatgtaggtgttcttctcttccctatcctttta |
135 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23649471 |
aaagagggaaccactataaattctggtgttcttctcttccctatcctttta |
23649421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 22267144 - 22267225
Alignment:
| Q |
24 |
ggaataccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaat |
105 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||||||| | ||||||| || ||||||| ||||| ||||||| |
|
|
| T |
22267144 |
ggaataccgtgatagagactttttctatcaccaagagaggacatatccctagtgagaacaaaaagggaaaacctttataaat |
22267225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 77 - 377
Target Start/End: Original strand, 23469649 - 23469951
Alignment:
| Q |
77 |
gaggacgaaaagggggaacctctataaatgtaggtgttcttctcttccctatccttttaatttgagcattatattt--gtgtatatgaattcattatgtg |
174 |
Q |
| |
|
||||| ||||||||| ||||||||||||| | ||| |||||| || | |||| ||||||||| | |||||||||| |||| ||||||||||||| ||| |
|
|
| T |
23469649 |
gaggatgaaaaggggaaacctctataaatctcggtattcttcactctcttatctttttaatttcaacattatattttggtgtttatgaattcattacgtg |
23469748 |
T |
|
| Q |
175 |
aagtgatcgttgtttga--gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagtt |
272 |
Q |
| |
|
||||||| || |||| ||||||| || |||||||||| ||||||||||| | ||||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
23469749 |
aagtgattattaattgattgtgagtt-actttttaccaaaa-ctaatctcaatatccttaattgagattttacagatttaattttctcacaatcaaagtt |
23469846 |
T |
|
| Q |
273 |
gaaagttaaatttaaacaattacttcatataccctatgtttattagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtg |
372 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||| | ||||| |||||||| ||||||| |
|
|
| T |
23469847 |
gaaaattaacttcgaacaattacttcatataccttatgttcatttgtcgttagtgtgatttattgttaataattttggtttgagatagtttgattttgtg |
23469946 |
T |
|
| Q |
373 |
atttg |
377 |
Q |
| |
|
||||| |
|
|
| T |
23469947 |
atttg |
23469951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 247 - 414
Target Start/End: Original strand, 29801309 - 29801476
Alignment:
| Q |
247 |
aattcaattttctcacaattaaagttgaaagttaaatttaaacaattacttcatataccctatgtttattagatgttagtgagatttattgttaataggg |
346 |
Q |
| |
|
||||||||||||||||||| |||| | || || || || |||||| | ||||||||||| | |||| ||||| |||||||| |||||||| |||||||| |
|
|
| T |
29801309 |
aattcaattttctcacaatcaaagctaaacgtaaacttcaaacaacttcttcatataccttgtgttcattagttgttagtgtgatttattcttaataggt |
29801408 |
T |
|
| Q |
347 |
ctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaatgaattttataatatgatt |
414 |
Q |
| |
|
| ||||| ||||||||| ||||| ||||| ||||||||| ||||| |||||| ||| ||| |||| |
|
|
| T |
29801409 |
ttggtttgagatagtttaattttgcaatttgaatgtgtgtaatgattgttgaattatattataagatt |
29801476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 29799033 - 29799356
Alignment:
| Q |
21 |
agtggaataccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttctc |
120 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||| ||| || |||| ||| ||||| |||| || |||||||||||||| | ||||||||| || |
|
|
| T |
29799033 |
agtggaagaccgtgatataggtgttttctatcacgaaaagatgatgtacccctagc-aggacaaaaaaggagaacctctataaatctcggtgttcttatc |
29799131 |
T |
|
| Q |
121 |
ttccctatccttttaa-tttgagcattatatttgtgtatatgaattcattatgtgaagtgatcgttgtttgagt--gagtttacaatttaccaaaatcta |
217 |
Q |
| |
|
|||| |||||||| || ||| ||||||||| ||| |||||||||| |||||||| | | | || | | |||||||| |||| ||||| ||| |
|
|
| T |
29799132 |
ttccatatcctttaaactttcagcattataattga----atgaattcatagtgtgaagttagcataagttaattatgagtttactattttacaaaaccta |
29799227 |
T |
|
| Q |
218 |
atctcaattttcttaattgagattttactaattcaattttctcacaattaaagttgaaagttaaatttaaac-aattacttcatataccctatgtttatt |
316 |
Q |
| |
|
| ||||||| | |||||||||||| ||||||||||| ||||||| |||||||||||| || || |||| |||| |||||||||| |||| ||| |
|
|
| T |
29799228 |
acatcaatttcatcaattgagattttctcaattcaattttatcacaatcaaagttgaaagtaaacttcaaacaaattgcttcatatacttcgtgttcatt |
29799327 |
T |
|
| Q |
317 |
agatgttagtgagatttattgttaatagg |
345 |
Q |
| |
|
|| ||||||| ||||||||||||||| |
|
|
| T |
29799328 |
agttgttagtatagtttattgttaatagg |
29799356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 18371657 - 18371707
Alignment:
| Q |
85 |
aaagggggaacctctataaatgtaggtgttcttctcttccctatcctttta |
135 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
18371657 |
aaagggggaaccactataaatctcagtgttcttctcttccatatcctttta |
18371707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 27878353 - 27878410
Alignment:
| Q |
77 |
gaggacgaaaagggggaacctctataaatgtaggtgttcttctcttccctatcctttt |
134 |
Q |
| |
|
|||||| |||||||||| || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
27878353 |
gaggacaaaaagggggagccactataaaccctggtgttcttctcttccctatcctttt |
27878410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 77 - 394
Target Start/End: Complemental strand, 5506247 - 5505930
Alignment:
| Q |
77 |
gaggacgaaaagggggaacctctataaatgtaggtgttcttctcttccctatccttttaatttgagcattatatttgtgtatatgaattcattatgtgaa |
176 |
Q |
| |
|
|||||||||| ||| ||||||||||||| | ||||||| |||||||||| ||||||| || |||||||| | ||| |||||| | ||| | |||| |
|
|
| T |
5506247 |
gaggacgaaa--gggaaacctctataaatctcaatgttcttatcttccctatacttttaagttctgcattataatcgtgcatatgattcgattgtatgaa |
5506150 |
T |
|
| Q |
177 |
gtgatcgttgtttga--gtgagtttacaatttaccaaaatctaatctcaattttcttaattgagattttactaattcaattttctcacaattaaagttga |
274 |
Q |
| |
|
|| || || ||||| ||||||| || | || | |||| ||||||||||||| || |||||| ||||| |||||||||| ||||||| ||||||| |
|
|
| T |
5506149 |
ttgttcattatttgattgtgagttaactaatttcaaaaacctaatctcaatttcctcaattgatattttctcaattcaatttaatcacaatccaagttga |
5506050 |
T |
|
| Q |
275 |
aagttaaatttaaacaattacttcatataccctatgtttattagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgat |
374 |
Q |
| |
|
|||| || || || ||||| |||||||||| |||||||||||| |||||||| | ||| ||||||||| | | ||||| ||| ||||||||||| || |
|
|
| T |
5506049 |
aagtgaacttcaagcaattgtttcatataccttatgtttattagttgttagtgtgctttgttgttaataagtttggtttgagattgtttagttttgcaat |
5505950 |
T |
|
| Q |
375 |
ttgtatgtgtgtattgatta |
394 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
5505949 |
ttgattgtgtgtattgatta |
5505930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 2758148 - 2758214
Alignment:
| Q |
53 |
acgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaatgtaggtgttcttct |
119 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||| ||| |||||||||||| | ||||||||||| |
|
|
| T |
2758148 |
acgaagagaggacgtacctctagtgaggtcgaaaaagggaaacctctataaacctcggtgttcttct |
2758214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 2767770 - 2767819
Alignment:
| Q |
53 |
acgaagagaggacatacctttagtgaggacgaaaagggggaacctctata |
102 |
Q |
| |
|
||||||||| ||| |||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
2767770 |
acgaagagatgacgtacccttagcgaggacaaaaagggggaacctctata |
2767819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 17504686 - 17504602
Alignment:
| Q |
21 |
agtggaataccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaat |
105 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||||| ||||||||| || |||| || |||| | || ||||||||||| |
|
|
| T |
17504686 |
agtggaagaccgtgatagagacgttttctatcatgaagagatgacatacctctaatgagaacaaaaaaagtgaccctctataaat |
17504602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 18618535 - 18618462
Alignment:
| Q |
30 |
ccgtgatagaggtgttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaat |
105 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||| || |||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
18618535 |
ccgtgatataggcattttctatcacgaagaga--acgtacccgtagcgaggacgaaaagggggaacctgtataaat |
18618462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 16441 - 16335
Alignment:
| Q |
296 |
ttcatataccctatgtttattagatgttagtgagatttattgttaatagggctcgtttgtgatagtttagttttgtgatttgtatgtgtgtattgattaa |
395 |
Q |
| |
|
|||||||||| | |||| ||||| |||||||| ||||| |||||| |||| | ||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16441 |
ttcatataccttttgttcattagttgttagtgtgatttgttgttactaggtttagtttgagatagtttagttttgcaatttgtatgtgtgtattgattgt |
16342 |
T |
|
| Q |
396 |
tgaattt |
402 |
Q |
| |
|
||||||| |
|
|
| T |
16341 |
tgaattt |
16335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 64323 - 64385
Alignment:
| Q |
43 |
gttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaat |
105 |
Q |
| |
|
||||| ||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
64323 |
gttttctatcacgaagagatgatatacccctagcgaggacgaaaagggggaacctctataaat |
64385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 66044 - 65982
Alignment:
| Q |
43 |
gttttatatcacgaagagaggacatacctttagtgaggacgaaaagggggaacctctataaat |
105 |
Q |
| |
|
||||| ||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
66044 |
gttttctatcacgaagagatgatatacccctagcgaggacgaaaagggggaacctctataaat |
65982 |
T |
|
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