View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_65 (Length: 263)
Name: NF6178_high_65
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 45122625 - 45122857
Alignment:
| Q |
22 |
gacttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaatttcaatacatttaattgcaatgtcataaaac |
121 |
Q |
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| T |
45122625 |
gacttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaatttcaatacatttaattgcaatgtcataaaac |
45122724 |
T |
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| Q |
122 |
atgcaaagtatataacaatgatcaagtttttaaatacatttgagtaaacttttaaaatgatccctgaatttgttgtaaggcactctcaataaaccttttt |
221 |
Q |
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| T |
45122725 |
atgcaaagtatataagaatgatcaagtttttaaatacatttgagtaaacttttaaaatgatccctgaatttgttgtaaggcactctcaataaaccttttt |
45122824 |
T |
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| Q |
222 |
caagttcttgttagtgtttgttactagtataat |
254 |
Q |
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| T |
45122825 |
caagttcttgttagtgtttggtactagtataat |
45122857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 45121904 - 45121969
Alignment:
| Q |
25 |
ttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaat |
90 |
Q |
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| T |
45121904 |
ttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaat |
45121969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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