View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_67 (Length: 256)
Name: NF6178_high_67
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 34602529 - 34602308
Alignment:
| Q |
20 |
ttatataagtgtcacaataataatgaaaggaatattaataattaattcaaagaaacgaacaaagctataaaatcttgccgta-tataaaagttctaagca |
118 |
Q |
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| T |
34602529 |
ttatataagtgtcacaataataatgaaaggaatattaataattaattcaaagaaacgaacaaagctataaaatattgccgtattataaaagttctaagca |
34602430 |
T |
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| Q |
119 |
gtggactctcatcaatattgtttacttaatatagtaattaataataccgcaaaatcatatagtcggtgtg-ttaatgtattgaccaatctaatttccaaa |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34602429 |
gtggactctcatcaatattg-ttacttaatatagtaattaataataccgcaaaatcatatagtcggtgtgtttaatgtattgaccaatctaatttccaaa |
34602331 |
T |
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| Q |
218 |
ctttgcagcaagagagagaatag |
240 |
Q |
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| T |
34602330 |
ctttgcagcaagagagagaatag |
34602308 |
T |
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