View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_high_7 (Length: 572)

Name: NF6178_high_7
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_high_7
NF6178_high_7
[»] chr4 (3 HSPs)
chr4 (15-276)||(36286240-36286501)
chr4 (442-567)||(36286054-36286179)
chr4 (260-402)||(40823853-40823995)
[»] chr6 (2 HSPs)
chr6 (19-289)||(16872119-16872390)
chr6 (373-442)||(16654243-16654312)
[»] chr7 (20 HSPs)
chr7 (266-399)||(20284848-20284981)
chr7 (248-402)||(20243512-20243666)
chr7 (260-402)||(20263906-20264048)
chr7 (260-401)||(20168102-20168243)
chr7 (260-402)||(20303594-20303736)
chr7 (260-401)||(20279416-20279557)
chr7 (260-402)||(20289156-20289298)
chr7 (268-399)||(20294565-20294696)
chr7 (260-392)||(20231457-20231589)
chr7 (266-404)||(19939009-19939147)
chr7 (266-404)||(19970148-19970286)
chr7 (6-132)||(20243796-20243922)
chr7 (21-132)||(19939299-19939410)
chr7 (21-132)||(19970438-19970549)
chr7 (6-121)||(20231735-20231850)
chr7 (280-402)||(20273711-20273833)
chr7 (6-135)||(20303862-20303991)
chr7 (57-133)||(20289417-20289493)
chr7 (6-121)||(20264194-20264309)
chr7 (6-132)||(20062335-20062461)
[»] chr8 (15 HSPs)
chr8 (361-424)||(19348300-19348363)
chr8 (361-424)||(19379366-19379429)
chr8 (361-424)||(19500631-19500694)
chr8 (359-424)||(19454361-19454426)
chr8 (359-422)||(19551618-19551681)
chr8 (359-422)||(19581007-19581070)
chr8 (359-424)||(15943112-15943177)
chr8 (359-424)||(19407341-19407406)
chr8 (361-422)||(19526650-19526711)
chr8 (361-424)||(19415420-19415483)
chr8 (359-424)||(16006438-16006503)
chr8 (359-404)||(19149273-19149318)
chr8 (359-429)||(15963795-15963865)
chr8 (359-424)||(19187197-19187262)
chr8 (373-422)||(19399065-19399114)
[»] chr2 (5 HSPs)
chr2 (268-421)||(2707336-2707489)
chr2 (268-421)||(2723728-2723881)
chr2 (277-421)||(2745567-2745711)
chr2 (268-421)||(2717106-2717259)
chr2 (328-400)||(2712642-2712714)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 36286501 - 36286240
Alignment:
Q  15 cttgtgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggag 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286501 cttgtgtttcttctaccaaaaacaatctctagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggag 36286402  T
Q  115 atatgtagcgactgcatttaaaggtcaaatgtctatgctcttagtattttctactatatttgttggacaaagaggaaggcatatacttgctatgttccaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286401 atatgtagcgactgcatttaaaggtcaaatgtctatgctcttagtattttctactatatttgttggacaaagaggaaggcatatacttgctatgttccaa 36286302  T
Q  215 taattcttcttgtcttgccattcacttcactgtctccaaataatttagccgtaccaaaatct 276  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286301 caattcttcttgtcttgccattcacttcactgtctccaaataatttagccgtaccaaaatct 36286240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 442 - 567
Target Start/End: Complemental strand, 36286179 - 36286054
Alignment:
Q  442 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaatatctgaaccactaaagactcat 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36286179 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaaaatctgaaccactaaagactcat 36286080  T
Q  542 tagcatgtttcatttcctatgctact 567  Q
    ||||||||||||||||||||| ||||    
T  36286079 tagcatgtttcatttcctatgttact 36286054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 402
Target Start/End: Original strand, 40823853 - 40823995
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | ||||| |||||| |||||||| |  ||| |  || ||||    
T  40823853 tagccataccaaagtctgatatttttggattcaactcctcgtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaagctct 40823952  T
Q  360 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 402  Q
     |||||||| |||||||||||||| |||||||| || ||||||    
T  40823953 atgaagataaagcaatcctcgagctattccttctatgatgtta 40823995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 16872119 - 16872390
Alignment:
Q  19 tgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatat 118  Q
    |||||||||| |||  ||||||||| |||||||||||||| ||||||||||||||| || |||  ||||||||| |||||||||||||||| ||||||||    
T  16872119 tgtttcttcttccactaacaatctctagtagtaatactccgaagctaaagacatcatatagctaagaaacaatttcttgcattgcgtattcgggagatat 16872218  T
Q  119 gtagcgactgcatttaaaggtcaaatgt-ctatgctcttagtattttctactatatttgttggacaaagaggaag--gcatatacttgctatgttccaat 215  Q
    | || |||| ||||||||| ||||| ||  |  |||||| |||| || ||| || ||| ||||  |||||| |||  |  ||||||| |||||||||||     
T  16872219 gcagtgactacatttaaagctcaaacgtaatgagctcttcgtatattttacaatcttt-ttggtgaaagagaaaggtgtgtatactttctatgttccaac 16872317  T
Q  216 aattcttcttgtcttgccattcacttcactgtctccaaataatttagccgtaccaaaatctgatattttcggat 289  Q
    ||||||| |  | |  || |||| ||||||||||||||||| ||||||| | | |||| |||||||||||||||    
T  16872318 aattcttgtcatatatcc-ttcatttcactgtctccaaatattttagccattcgaaaacctgatattttcggat 16872390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 16654312 - 16654243
Alignment:
Q  373 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttttgtttatatggat 442  Q
    |||| ||||||||||||||||| ||||||||||| || || |||||||  ||| | ||||||| ||||||    
T  16654312 aatcttcgagcaattccttcaactatgttaaaacactattcccaatcttacatctgttgtttaaatggat 16654243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 20284981 - 20284848
Alignment:
Q  266 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 365  Q
    ||||||| ||||||||||| ||||||||| | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||| |||||||||||||    
T  20284981 taccaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaag 20284882  T
Q  366 atatagcaatcctcgagcaattccttcaattatg 399  Q
    |||||||||||||||||| |||||||| ||||||    
T  20284881 atatagcaatcctcgagctattccttcgattatg 20284848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 402
Target Start/End: Complemental strand, 20243666 - 20243512
Alignment:
Q  248 ctccaaataatttagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaa 347  Q
    ||||||||| | |||||  |||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||     
T  20243666 ctccaaatattctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttag 20243567  T
Q  348 tctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 402  Q
     ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  20243566 cctagaatctctgtgaagatatagcaaccctcgagcaattccttctatgatgtta 20243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 402
Target Start/End: Complemental strand, 20264048 - 20263906
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||||    
T  20264048 tagccataccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttcaaatctctatgaataattcttagcctagaatctct 20263949  T
Q  360 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 402  Q
    ||||||||||||||| ||||||||||||||||| || ||||||    
T  20263948 gtgaagatatagcaaccctcgagcaattccttctataatgtta 20263906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 20168102 - 20168243
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||  |||||||    
T  20168102 tagccataccaaattctgatatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaatctct 20168201  T
Q  360 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 401  Q
    ||| |||||||||||||| ||||| |||||||| ||||||||    
T  20168202 gtggagatatagcaatccacgagctattccttctattatgtt 20168243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 260 - 402
Target Start/End: Complemental strand, 20303736 - 20303594
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| || || ||||| ||||||||| | ||||| ||||| || ||||| | ||| |||||||| |||||||| | || |||  |||||||    
T  20303736 tagccataccaaagtcggaaatttttggattcagctcctcatctaacaagatattacttgtcttcaaatctctgtgtataattcttagtctcgaatctct 20303637  T
Q  360 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 402  Q
    ||||||||| | ||||||||||||||||||||| || ||||||    
T  20303636 gtgaagatacaacaatcctcgagcaattccttctataatgtta 20303594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 401
Target Start/End: Complemental strand, 20279557 - 20279416
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| ||||||||||| ||||||||| | ||||| ||||  |  ||||| ||||| |||||||| || ||||| | || |||  |||||||    
T  20279557 tagccataccaaagtctgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaatctct 20279458  T
Q  360 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 401  Q
    |||||||||||||||||| ||||| ||||||||  |||||||    
T  20279457 gtgaagatatagcaatccgcgagctattccttctgttatgtt 20279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 402
Target Start/End: Complemental strand, 20289298 - 20289156
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | |||||||||||| |||||||| |  ||| |  |||||||    
T  20289298 tagccataccaaagtctgatattttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaatctct 20289199  T
Q  360 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 402  Q
     |||||||| |||||||||||||| ||||| || || ||||||    
T  20289198 atgaagataaagcaatcctcgagctattccatctataatgtta 20289156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 268 - 399
Target Start/End: Complemental strand, 20294696 - 20294565
Alignment:
Q  268 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 367  Q
    ||||| || |||||||| ||||||||| | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||| ||||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat 20294597  T
Q  368 atagcaatcctcgagcaattccttcaattatg 399  Q
    | |||||||||||||| |||||||| ||||||    
T  20294596 acagcaatcctcgagctattccttctattatg 20294565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 392
Target Start/End: Complemental strand, 20231589 - 20231457
Alignment:
Q  260 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 359  Q
    ||||| ||||||| ||||||||||| ||||||| |   ||||| ||||  |  ||||| ||||| ||| ||||||| ||||| | ||  ||| |||||||    
T  20231589 tagccataccaaagtctgatatttttggattcaacttctcatctaacaggacattacttgccttcaaacctctatgaataattcttagcctagaatctct 20231490  T
Q  360 gtgaagatatagcaatcctcgagcaattccttc 392  Q
    ||||||||||| ||| |||||||||||||||||    
T  20231489 gtgaagatataacaaccctcgagcaattccttc 20231457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 404
Target Start/End: Complemental strand, 19939147 - 19939009
Alignment:
Q  266 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 365  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19939147 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19939048  T
Q  366 atatagcaatcctcgagcaattccttcaattatgttaaa 404  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19939047 atacaacaatcctcgagctattccttctattatgctaaa 19939009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 404
Target Start/End: Complemental strand, 19970286 - 19970148
Alignment:
Q  266 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 365  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19970286 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19970187  T
Q  366 atatagcaatcctcgagcaattccttcaattatgttaaa 404  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19970186 atacaacaatcctcgagctattccttctattatgctaaa 19970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 20243922 - 20243796
Alignment:
Q  6 tcataaatccttgtgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 105  Q
    |||||||  |||| ||||||||| || | ||||||||| ||||| ||||| ||||||||||| |||||  ||| ||| ||||  | |||||||||||| |    
T  20243922 tcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcat 20243823  T
Q  106 attctggagatatgtagcgactgcatt 132  Q
    |||| ||||| ||||||| ||| ||||    
T  20243822 attcaggagacatgtagccactacatt 20243796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 19939410 - 19939299
Alignment:
Q  21 tttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgt 120  Q
    |||||||| |||  || |||||| || ||||| ||||||||||||||||||||| |||  || ||||  | |||||||||||| ||||||||||| || |    
T  19939410 tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatat 19939311  T
Q  121 agcgactgcatt 132  Q
    | | ||||||||    
T  19939310 aaccactgcatt 19939299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 19970549 - 19970438
Alignment:
Q  21 tttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgt 120  Q
    |||||||| |||  || |||||| || ||||| ||||||||||||||||||||| |||  || ||||  | |||||||||||| ||||||||||| || |    
T  19970549 tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatat 19970450  T
Q  121 agcgactgcatt 132  Q
    | | ||||||||    
T  19970449 aaccactgcatt 19970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 20231850 - 20231735
Alignment:
Q  6 tcataaatccttgtgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 105  Q
    |||||||  |||| ||||||||| || | ||||||||| ||||| ||||| ||||||||||| |||||  ||| ||| ||||  | |||||||||||| |    
T  20231850 tcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcat 20231751  T
Q  106 attctggagatatgta 121  Q
    |||| ||||| |||||    
T  20231750 attcaggagacatgta 20231735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 402
Target Start/End: Complemental strand, 20273833 - 20273711
Alignment:
Q  280 attttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctc 379  Q
    ||||| ||||||||| | || || ||||| |  ||||| ||||| ||||||||||| ||||| | ||  ||  |||||||||||||||||| ||| ||||    
T  20273833 atttttggattcagctcctcgtctaacaagacattacttgccttcaaatctctatgaataattcttagcctggaatctctgtgaagatataacaaccctc 20273734  T
Q  380 gagcaattccttcaattatgtta 402  Q
    |||| |||||||| || ||||||    
T  20273733 gagctattccttctataatgtta 20273711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 20303991 - 20303862
Alignment:
Q  6 tcataaatccttgtgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 105  Q
    |||||||  |||| ||||||||| |||  ||| ||||| || |  ||||| ||||||||||| |||||  ||| ||| |||| || |||| |||||||||    
T  20303991 tcataaaagcttgagtttcttctcccactaacgatctctagaatcaatacaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgt 20303892  T
Q  106 attctggagatatgtagcgactgcatttaa 135  Q
    |||| ||||| || |||| |||||||||||    
T  20303891 attcaggagacatatagccactgcatttaa 20303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 20289493 - 20289417
Alignment:
Q  57 ccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgtattctggagatatgtagcgactgcattt 133  Q
    |||||||||||||||||  ||| ||| ||||  | |||||||||||||||||| |||||||| || | |||||||||    
T  20289493 ccaaagctaaagacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactgcattt 20289417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 20264309 - 20264194
Alignment:
Q  6 tcataaatccttgtgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 105  Q
    |||||||  |||| ||||||||| || | ||||||||| ||||| ||||| ||||||||||| |||||  | | ||| ||||  | |||||||||||| |    
T  20264309 tcataaaaacttgagtttcttctcccgataacaatctctagtagcaatacaccaaagctaaaaacatctgacttctctgaaaataatccttgcattgcat 20264210  T
Q  106 attctggagatatgta 121  Q
    |||| ||||| |||||    
T  20264209 attcgggagacatgta 20264194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 20062335 - 20062461
Alignment:
Q  6 tcataaatccttgtgtttcttctaccaaaaacaatctccagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt 105  Q
    |||||||  |||| ||||||||| |||  || |||||| ||||  || || ||||||||||| |||||  ||| ||| |||| || ||||||||||||||    
T  20062335 tcataaaagcttgagtttcttctcccagtaagaatctcaagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcgt 20062434  T
Q  106 attctggagatatgtagcgactgcatt 132  Q
    |||| ||||| || || | ||||||||    
T  20062435 attcaggagacatataaccactgcatt 20062461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 19348363 - 19348300
Alignment:
Q  361 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  19348363 tgaagatagagcaatccttgagcaattccttctattatgttaaaacgcttcttccaatctagca 19348300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 19379429 - 19379366
Alignment:
Q  361 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19379429 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19379366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 19500631 - 19500694
Alignment:
Q  361 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19500631 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19500694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 19454426 - 19454361
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  19454426 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctagca 19454361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 19551618 - 19551681
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 422  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19551618 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19551681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 19581070 - 19581007
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 422  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19581070 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19581007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 15943177 - 15943112
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    ||||||||||||| |||||| |||| |||||||| |||||| |||| ||||| |||||||||||||    
T  15943177 tgtgaagatatagtaatccttgagcgattccttcgattatgctaaagcgcttattccaatctagca 15943112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 19407406 - 19407341
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    |||||||||| || |||||| ||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19407406 tgtgaagatagagtaatccttgagaaattccttctattacgttgaaacgctttttccaatctagca 19407341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 19526650 - 19526711
Alignment:
Q  361 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 422  Q
    |||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19526650 tgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19526711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 19415483 - 19415420
Alignment:
Q  361 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    |||||||| || |||||| ||| ||||||||| |||||||| |||||||| |||||||||||||    
T  19415483 tgaagatagagtaatccttgagaaattccttcgattatgttgaaacgcttcttccaatctagca 19415420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 16006503 - 16006438
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    ||||||| || || |||||| ||||||||||||| |||||| ||||||| || |||||||||||||    
T  16006503 tgtgaaggtaaagtaatccttgagcaattccttctattatgctaaaacgtttgttccaatctagca 16006438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 19149273 - 19149318
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 404  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  19149273 tgtgaagatatagtaatccttgagcaattccttctattatgttaaa 19149318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 15963795 - 15963865
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttt 429  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||| |||||||    
T  15963795 tgtgaaggtatagtagtccttgagcaattccttcgattatgctaaagcgtttgttccaatctaacattttt 15963865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 19187262 - 19187197
Alignment:
Q  359 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 424  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||||||    
T  19187262 tgtgaaggtatagtagtccttgagcaattccttctattatgctaaagcgtttattccaatctagca 19187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 19399114 - 19399065
Alignment:
Q  373 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 422  Q
    |||||| ||| ||||||||| |||||||| |||||||| |||||||||||    
T  19399114 aatccttgagaaattccttctattatgttgaaacgcttcttccaatctag 19399065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 2707336 - 2707489
Alignment:
Q  268 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 367  Q
    |||||||| |||||||| |||||||   || |||| ||||| || ||||| | |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2707336 ccaaaatcagatatttttggattcaattctccatccaacaagatattacttggctttaggtctctatgtattattcttaatcttgaatctctatgaagat 2707435  T
Q  368 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 421  Q
    | ||||  |||||||  ||||||||||||||| | ||||| |||||||||||||    
T  2707436 aaagcagacctcgagagattccttcaattatggttaaacgttttttccaatcta 2707489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 2723728 - 2723881
Alignment:
Q  268 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 367  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2723728 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagat 2723827  T
Q  368 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 421  Q
    | |||| ||| ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2723828 aaagcagtccgcgagagattccctcaattatgtataagcgtttttgccaatcta 2723881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 2745567 - 2745711
Alignment:
Q  277 gatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatc 376  Q
    |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||| |||| ||    
T  2745567 gatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtc 2745666  T
Q  377 ctcgagcaattccttcaattatgttaaaacgctttttccaatcta 421  Q
    | ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2745667 cgcgagagattccctcaattatgtataagcgtttttgccaatcta 2745711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 2717106 - 2717259
Alignment:
Q  268 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 367  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || |||||||  ||||  |||||||| || || | ||||||  ||||||| |||||||    
T  2717106 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcgaatctctatgaagat 2717205  T
Q  368 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 421  Q
    | |||| ||| ||||  ||||||||||||||||  || || |||| ||||||||    
T  2717206 aaagcagtccgcgagagattccttcaattatgtataagcgtttttgccaatcta 2717259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 2712642 - 2712714
Alignment:
Q  328 tctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgt 400  Q
    ||||||||||| || | ||||||  ||||||  |||||||| |||||||||||||  ||||| ||||||||||    
T  2712642 tctctatgtattattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgt 2712714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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