View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_high_74 (Length: 246)

Name: NF6178_high_74
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_high_74
NF6178_high_74
[»] chr8 (4 HSPs)
chr8 (10-227)||(1884566-1884783)
chr8 (15-194)||(15218027-15218206)
chr8 (44-114)||(14773023-14773093)
chr8 (46-116)||(28281194-28281264)
[»] chr2 (5 HSPs)
chr2 (15-194)||(16290915-16291094)
chr2 (15-176)||(8178094-8178255)
chr2 (15-194)||(45329399-45329578)
chr2 (44-154)||(8560856-8560966)
chr2 (45-114)||(27511883-27511952)
[»] chr6 (4 HSPs)
chr6 (15-194)||(6079747-6079926)
chr6 (15-187)||(20430320-20430492)
chr6 (38-101)||(34728136-34728199)
chr6 (45-114)||(18859074-18859143)
[»] chr1 (3 HSPs)
chr1 (15-194)||(49350217-49350396)
chr1 (15-114)||(51442329-51442428)
chr1 (49-125)||(16538567-16538643)
[»] chr3 (5 HSPs)
chr3 (15-194)||(52136485-52136667)
chr3 (15-194)||(51450508-51450689)
chr3 (45-194)||(9256461-9256611)
chr3 (44-114)||(15325956-15326026)
chr3 (194-227)||(9256602-9256635)
[»] chr5 (2 HSPs)
chr5 (38-194)||(2078280-2078440)
chr5 (30-190)||(25300-25460)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-194)||(440256-440435)
[»] scaffold0279 (1 HSPs)
scaffold0279 (15-194)||(18555-18732)
[»] chr4 (5 HSPs)
chr4 (15-227)||(27452886-27453089)
chr4 (51-119)||(16000430-16000498)
chr4 (45-114)||(14145277-14145346)
chr4 (20-101)||(35672301-35672382)
chr4 (15-87)||(55834494-55834566)
[»] scaffold0029 (1 HSPs)
scaffold0029 (45-114)||(139876-139945)
[»] scaffold0002 (1 HSPs)
scaffold0002 (45-114)||(317342-317411)
[»] chr7 (1 HSPs)
chr7 (45-114)||(22846283-22846352)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 1884783 - 1884566
Alignment:
Q  10 gtgagatgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagtt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884783 gtgaaatgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagtt 1884684  T
Q  110 catgataatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggagga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1884683 catgataatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggatgtagtagacactatgactaggatgactaggaggagga 1884584  T
Q  210 ttaattttatgtgcctac 227  Q
    ||||||||||||||||||    
T  1884583 ttaattttatgtgcctac 1884566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 15218206 - 15218027
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||| | | ||| |||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  15218206 atgagcaagggccgctgcattgccgcctggatgtagtgaaaaataagcaagggttcccacatcttcgtgaacaggtgcgggtaaagaagctagttcatga 15218107  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     | ||| |||||||||||||| | ||||||||  |||||| |    |||| |||||||||||||||||||||||| ||||    
T  15218106 gagtaggattcgttttggaacttggaatataggtactcttacgtgtaaatctatggaagtagtagacactatgacaagga 15218027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 14773093 - 14773023
Alignment:
Q  44 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||||||| |||||||| |||||||  ||| |||||  |||||| ||| ||||||||||| ||||||||||    
T  14773093 gatgcagtaaaaaataagcaagggtctccaaatctttgtgaacgagtgtgggtaaagaagttagttcatga 14773023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 28281194 - 28281264
Alignment:
Q  46 tgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgata 116  Q
    ||||||||||||||| ||| |||| |||||| ||| ||| ||| | ||| |||||||| ||||||||||||    
T  28281194 tgcagtgaaaaataagcaacggtttccacattttcgtgagcggatacggctaaagaagttagttcatgata 28281264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 16290915 - 16291094
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| ||||||| | ||||| | ||||| |||| |||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  16290915 atgagcaagggttgctgcattgccacctggatgtagtgaaaaataagcaacggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatga 16291014  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     ||||| |||||||||||||| | ||||||||  || ||| ||| ||||| |||||||||||||||||| ||||||||||    
T  16291015 gaataggattcgttttggaacttggaatataggtacacttacaggaaaatctatggaagtagtagacacaatgactagga 16291094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 8178094 - 8178255
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | ||| |||| |||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  8178094 atgagcaagggccgctgcatcgccgcctggatgtagtgaaaaataagcaagggttcacgcatcttcgtgaacgggtgcgggtaaagaagctagttcatga 8178193  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtag 176  Q
     ||||| |||||||||||||| | ||||||||  || ||| ||| ||||| |||||||||||    
T  8178194 gaataggattcgttttggaacttggaatataggtacacttacaggaaaatctatggaagtag 8178255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 45329578 - 45329399
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||||||| |  ||||||| |  || |||| |||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||| |    
T  45329578 atgaacaagggccactgcatcgccgtctggatgtagtgaaaaataagcaagggttcccacatctacgtaaacgggtgcgggtaaagaagctagttcatta 45329479  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     | ||| |||||||||||||| | ||||||||  |||||| | |  |||| ||| ||| ||||||||||||||| |||||    
T  45329478 gagtaggattcgttttggaacttggaatataggtactcttacgggtaaatctatagaaatagtagacactatgattagga 45329399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 8560966 - 8560856
Alignment:
Q  44 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaata 143  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||| |||| ||||  | |||||||||||| | |||||    
T  8560966 gatgcagtgaaaaataagcaagggttcccacatctttatgaacgggtgctggtaaagaagctagttaatgagaataagaatcgttttggaacatggaata 8560867  T
Q  144 tagacactctt 154  Q
    ||  |||||||    
T  8560866 tatgcactctt 8560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 27511952 - 27511883
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||| |||||||||||||| |  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  27511952 atgcagtaaaaaataaacaaggatctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 27511883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 6079747 - 6079926
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | | | |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  6079747 atgagcaagggccgctgcatcgccgcttggatgtagtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatga 6079846  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     ||||| |||||||||||||| | ||||||||  || ||| ||| ||||| ||||||||||| |||||| ||||||||||    
T  6079847 gaataggattcgttttggaacctggaatataggtacacttacaggaaaatctatggaagtagaagacacaatgactagga 6079926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 20430492 - 20430320
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||||||| || | ||||| | ||| |||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20430492 atgaacaagggccgctacatcgccgcctggatgtagtgaaaaataagtaagggttcccacatcttcgtgaacgggtgcgggtaaagaagctagttcatga 20430393  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatg 187  Q
     | ||| |||||||||||||| | ||||||||  |||||| | |  |||| |||||||| |||||||||||||    
T  20430392 gagtaggattcgttttggaacatggaatataggtactcttacgggcaaatctatggaagcagtagacactatg 20430320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 34728199 - 34728136
Alignment:
Q  38 cacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaaga 101  Q
    ||||| ||| ||||||||||||| |||||||| || ||||||| |||| ||||| |||||||||    
T  34728199 cacctcgattcagtgaaaaataagcaagggtttccgcatcttcatgaatgggtgtgggtaaaga 34728136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 18859143 - 18859074
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||| |||||||||||||| |  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  18859143 atgcagtaaaaaataaacaaggctctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 18859074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 49350396 - 49350217
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | ||| ||||  ||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  49350396 atgagcaagggccgctgcatcgccgcctggatgttgtgaaaaataagcaagggttcccgcatcttcatgaacgagtgcgggtaaagaagctagttcatga 49350297  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     ||||| |||||||||||||| | ||||||||  || ||| ||| ||||| |||||||||||||||||| ||||||||||    
T  49350296 gaataggattcgttttggaacttggaatataggtacacttacaggaaaatctatggaagtagtagacacaatgactagga 49350217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 51442428 - 51442329
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | ||| |||| |||||||||||| ||||||||||| ||||||  ||||||||||||||| |||||||||||||||||    
T  51442428 atgagcaagggccgctgcatcgccgcctggatgtagtgaaaaataagcaagggttcccgcatctttgtgaacgggtgcgggtgaagaagctagttcatga 51442329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 16538643 - 16538567
Alignment:
Q  49 agtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattc 125  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||| ||||||| |||| |||||    
T  16538643 agtgaaaaataagcaagggttcccacatcttcgtgaacgggtgcaagtaaagaagctaattcatgagaatataattc 16538567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 52136485 - 52136667
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | |||  ||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  52136485 atgagcaagggccgctgcatcgccgcctgaatgtagtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatga 52136584  T
Q  115 taat---agaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     |||   || |||||||||||||| | ||||||||| || ||| ||| ||||| |||||||||||||||||| ||||||||||    
T  52136585 gaataggaggattcgttttggaacttggaatatagatacacttacaggaaaatctatggaagtagtagacacaatgactagga 52136667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 51450689 - 51450508
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagc--tagttcat 112  Q
    |||| |||||| || ||||||| | ||| |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||  ||||||||    
T  51450689 atgagcaagggccgctgcatcgccgcctggatgtagtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctatagttcat 51450590  T
Q  113 gataatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
    || ||||| |||||||||||||| | ||||||||  || ||| ||| ||||| |||| ||||||||||||| ||||||||||    
T  51450589 gagaataggattcgttttggaacttggaatataggtacacttacaggaaaatctatgtaagtagtagacacaatgactagga 51450508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 9256461 - 9256611
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgtagaatat 144  Q
    ||||| ||||||||||  |||||||||||||| ||  |||||||||||| ||||||| | |||||||||  ||||| ||| |||||||| | | ||||||    
T  9256461 atgcaatgaaaaataagtaagggttcccacatatttttgaacgggtgcgagtaaagatgttagttcatgtgaataggatttgttttggaccatggaatat 9256560  T
Q  145 agacactctttc-agaaaaatttatggaagtagtagacactatgactagga 194  Q
    || | ||||  | || ||||| |||||||||| |||||| |||||||||||    
T  9256561 aggcgctctaacaagtaaaatctatggaagtattagacattatgactagga 9256611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 15325956 - 15326026
Alignment:
Q  44 gatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||||||| |||||||| |||||||  ||| |||||  |||||| ||| ||||||||||| ||||||||||    
T  15325956 gatgcagtaaaaaataagcaagggtctccaaatctttgtgaacgagtgtgggtaaagaagttagttcatga 15326026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 9256602 - 9256635
Alignment:
Q  194 atgactaggaggaggattaattttatgtgcctac 227  Q
    |||||||||||||||| |||||||||||||||||    
T  9256602 atgactaggaggaggactaattttatgtgcctac 9256635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 2078440 - 2078280
Alignment:
Q  38 cacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttttggaacgt 137  Q
    ||||| |||| |||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |    
T  2078440 cacctggatgtagtgaaaattaagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttttggaactt 2078341  T
Q  138 agaatatagacactctttcagaaaa----atttatggaagtagtagacactatgactagga 194  Q
      |||||||  || ||| ||| |||    || |||||||||||||||||| ||||||||||    
T  2078340 gaaatataggtacacttacaggaaaatctatctatggaagtagtagacacaatgactagga 2078280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 25300 - 25460
Alignment:
Q  30 tgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataatagaattcgttt 129  Q
    |||||||||| || |||||||| | |||||| |||||||||  |||||||  ||||||||||||| |||||||| | |||||||| ||||  ||| ||||    
T  25300 tgcatcgtcagctggatgcagtaagaaataagcaagggttctgacatctttgtgaacgggtgcggataaagaagtttgttcatgagaataagatttgttt 25399  T
Q  130 tggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgact 190  Q
    |||||| | |||||| |||||||||   | ||||| |||||||| ||| ||||||||||||    
T  25400 tggaacatggaatattgacactcttatgggaaaatctatggaagcagtggacactatgact 25460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 440256 - 440435
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | ||| |||  |||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  440256 atgagcaagggccgctgcatcgccgcctggatatagtgaaaaataagcaagggttcccacatcttcgtgaacgggtgagggtaaagaatctagttcatga 440355  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     | ||  ||| |||||||||| | ||| | ||  ||||||   | ||||| |||||||||||||||||||||||||||||    
T  440356 gagtatgatttgttttggaacatggaacacaggtactcttatgggaaaatctatggaagtagtagacactatgactagga 440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 18555 - 18732
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||| | ||| |||| |||||||||||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||     
T  18555 atgagcaagggccgctgcatcgccgcctggatgtagtgaaaaataagcaagagttcccacatcttcttgaacgggtgtgggtaaagaagctagttcatg- 18653  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactagga 194  Q
     | ||| ||| ||||||||||   ||||||||  | |||| | |  |||| |||||||||||||||||| |||| |||||    
T  18654 -agtaggatttgttttggaacacggaatataggtaatcttacgggtaaatctatggaagtagtagacacaatgattagga 18732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 27453089 - 27452886
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    |||| |||||| || ||||||  | ||| |||| |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  27453089 atgagcaagggccgctgcatcaccgcctggatgtagtgaaaaataagcaagggtttccacatcttcgtgaacgggtgtgggtaaagaagctagttcatga 27452990  T
Q  115 taatagaattcgttttggaacgtagaatatagacactctttcagaaaaatttatggaagtagtagacactatgactaggatgactaggaggaggattaat 214  Q
     |  || ||||||||||| || |  |||||||  ||||||   |  |||| ||||||||||||||||| |         ||||| |||||||||||||||    
T  27452989 gagcaggattcgttttgggacatgtaatataggtactcttgtgggtaaatctatggaagtagtagacatt---------atgaccaggaggaggattaat 27452899  T
Q  215 tttatgtgcctac 227  Q
    |||||||||||||    
T  27452898 tttatgtgcctac 27452886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 16000430 - 16000498
Alignment:
Q  51 tgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatgataata 119  Q
    |||||||||| ||||||||| ||||||||| |||||| |||| ||||| ||||||||||||||| ||||    
T  16000430 tgaaaaataagcaagggttctcacatcttcgtgaacgagtgcaggtaaggaagctagttcatgagaata 16000498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 14145277 - 14145346
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  14145277 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 14145346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 35672382 - 35672301
Alignment:
Q  20 caagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaaga 101  Q
    |||||||||||||||||   | |  |||||||||||||||| |||||||||||| |||||  || ||  |||||||||||||    
T  35672382 caagggtcgttgcatcgctgcttgaatgcagtgaaaaataagcaagggttcccaaatctttgtggacatgtgcgggtaaaga 35672301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 55834566 - 55834494
Alignment:
Q  15 atgaacaagggtcgttgcatcgtcacctagatgcagtgaaaaataaacaagggttcccacatcttcctgaacg 87  Q
    |||| |||||| || ||||||||| ||  |||| |||||||||||| |||||||||| | |||||| ||||||    
T  55834566 atgagcaagggccgctgcatcgtcgcccggatgtagtgaaaaataagcaagggttcctatatcttcgtgaacg 55834494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 139876 - 139945
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  139876 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 139945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 317342 - 317411
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  317342 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 317411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 22846352 - 22846283
Alignment:
Q  45 atgcagtgaaaaataaacaagggttcccacatcttcctgaacgggtgcgggtaaagaagctagttcatga 114  Q
    ||||||| |||||||| |||||||  |||||||||  |||||| ||| ||||||||||| ||||| ||||    
T  22846352 atgcagtaaaaaataagcaagggtctccacatctttgtgaacgagtgtgggtaaagaagttagttaatga 22846283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University