View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6178_high_79 (Length: 236)
Name: NF6178_high_79
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_79 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 13475630 - 13475812
Alignment:
| Q |
36 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
135 |
Q |
| |
|
||||| |||| || |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
13475630 |
aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata--gagttacagcagagtaattgcagagaa |
13475727 |
T |
|
| Q |
136 |
atacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatg |
220 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||| || ||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
13475728 |
atacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagactttaggtaatgaaaatg |
13475812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 14108636 - 14108502
Alignment:
| Q |
86 |
tgacaattgacaatactgatatagagttacagtagagtaaatgcagagaaatacgagaatgataagcataaggaaaattacactcacctcccataagttc |
185 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||||||| | ||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
14108636 |
tgacaattgacaatatcgacatagagttacagcagagtaatttcagagaaatacgaaaatgataggaataatgaaaattacactcacctcccataagttc |
14108537 |
T |
|
| Q |
186 |
tattaaaatgacacagacctcaggtaatgaaaatg |
220 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||| |
|
|
| T |
14108536 |
tattaaaaggatacagacttcaggtaatgaaaatg |
14108502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 14020480 - 14020310
Alignment:
| Q |
36 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
135 |
Q |
| |
|
||||||| || || ||||||||||||||||||| ||||||| ||||| | ||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14020480 |
aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata--gagttacag-----------cagagaa |
14020394 |
T |
|
| Q |
136 |
atacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatgt |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||| |
|
|
| T |
14020393 |
atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa--atacggacttcaggtaatgaaaatgt |
14020310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14044816 - 14044769
Alignment:
| Q |
1 |
ctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14044816 |
ctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
14044769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 14020553 - 14020524
Alignment:
| Q |
5 |
aattaaaatgtatttatgttcacatttcaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14020553 |
aattaaaatgtatttatgttcacatttcaa |
14020524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
| Q |
19 |
tatgttcacatttcaataaaaatttatcta |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14044720 |
tatgttcacatttcaataaaaatttatcta |
14044691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 10507846 - 10507903
Alignment:
| Q |
78 |
ttagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
10507846 |
ttagtttatgacaattgacaatactgatatagacttacagcagagtaattgcagagaa |
10507903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 8753659 - 8753612
Alignment:
| Q |
78 |
ttagtttatgacaattgacaatactgatatagagttacagtagagtaa |
125 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||| ||||||| |
|
|
| T |
8753659 |
ttagtttatgacaattgacattagtgatatagacttacagcagagtaa |
8753612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 40816207 - 40816245
Alignment:
| Q |
158 |
gaaaattacactcacctcccataagttctattaaaatga |
196 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
40816207 |
gaaaattgcactcacctcccctaagttctattaaaatga |
40816245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University