View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_high_91 (Length: 203)
Name: NF6178_high_91
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 13317010 - 13316944
Alignment:
| Q |
16 |
atcaaggtaagagaagttgctatagtaaatggtgtagaagcatacccaatttttatagcatataagt |
82 |
Q |
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| T |
13317010 |
atcaaggtaagagaagttgctatagtaaatggtgtagaagcatacccaatttttatagcatataagt |
13316944 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 13316899 - 13316839
Alignment:
| Q |
127 |
gtgtgatgttgataattaccttgtgatgggagcaaggtagagatgcaagagaagagataaa |
187 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13316899 |
gtgtgatgttgataattaccttgtggtgggagcaaggtagagatgcaagagaagagataaa |
13316839 |
T |
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