View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_1 (Length: 746)
Name: NF6178_low_1
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 25527516 - 25527819
Alignment:
| Q |
18 |
gcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtgcaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25527516 |
gcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtacaaat |
25527615 |
T |
|
| Q |
118 |
caagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25527616 |
caagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgattcgttgctgagaacgccgactggcg |
25527715 |
T |
|
| Q |
218 |
ggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtggagttcttcaggaggaggctggggctccgccgttgctgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25527716 |
ggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtggagttcttcaggaggaggctgaggctccgccgttgctgct |
25527815 |
T |
|
| Q |
318 |
tgtt |
321 |
Q |
| |
|
|||| |
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| T |
25527816 |
tgtt |
25527819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 381 - 736
Target Start/End: Original strand, 25527879 - 25528227
Alignment:
| Q |
381 |
tggcgacagagtgacattgttgagtttgaaaccctaaaatttcgtactttctaatttgaaatgaaaatgaaatgaattcttctaacatctttcttcttat |
480 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527879 |
tggcgaaagagtgacattgttgagtttgaaaccctaaaatttcgtactttctattttgaaatgaaaatgaaatgaattcttctaacatctttcttcttat |
25527978 |
T |
|
| Q |
481 |
atatactacccccagcagaattgtcttaacacctttcttaattaaacctgtttagtttagtttgagaagatgaagtgtgtatctttttccttttcattat |
580 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
25527979 |
atatactaccaccagcagaattgtcttaacacctttcttaattaaacctgtttagtttagtttgagaagatgaagtg-------tatttattttcattat |
25528071 |
T |
|
| Q |
581 |
gacttgcttgttttgacccatactaattatgacttgtattacatactctcttcagtggcattttagcgtgggaatggaaaagagttttccaccgaagaat |
680 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
25528072 |
gacttgcttgttttgacccatactaattatgacttgtatttcatactcacttcagtggcattttagtgtgggaatggaaaagagttttccacacgagaat |
25528171 |
T |
|
| Q |
681 |
tttaacgattatataaatgaggaacattgatcttatcatagtctctctgcattata |
736 |
Q |
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|||||| |||||||||||||| || |||||| |||||||||| ||| ||||||||| |
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|
| T |
25528172 |
tttaactattatataaatgagaaatattgattttatcatagtttctttgcattata |
25528227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 25535548 - 25535841
Alignment:
| Q |
21 |
tcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtgcaaatcaa |
120 |
Q |
| |
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||||||| ||||||||||||||| || ||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
25535548 |
tcaatgcggccctcatcacaataagcattgataacaaagttataagagacaatgttaggagcaattttaaagaggttaaagaagaactcgtacaaatcaa |
25535647 |
T |
|
| Q |
121 |
gagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcgggc |
220 |
Q |
| |
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||||||| |||| |||||| || |||||||| ||| | ||||| || |||||||||||||| || |||||||| ||||||||||||| |||||||||||| |
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| T |
25535648 |
gagcttcattgtatcttttcgcacggtgcattgcagcaatgatagcattgcaggtgaacacagttggacgagttgttgctgagaacgtcgactggcgggc |
25535747 |
T |
|
| Q |
221 |
catggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtggagttcttcaggaggaggctggggctccgccgttgct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535748 |
catggcagaggcagcgtcgaggttgccggagcgaatcaacgatctgacgcgcgtgtggagttcttcaggaggaggctggggctccgccgttgct |
25535841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 25514893 - 25514657
Alignment:
| Q |
21 |
tcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtgcaaatcaa |
120 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| | |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
25514893 |
tcaatgcggccctcatcacaataggcattgataacaaagttatgagagacaatgttaggaacaattttaaacaagttaaagaagaactcgtacaaatcaa |
25514794 |
T |
|
| Q |
121 |
gagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcgggc |
220 |
Q |
| |
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|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514793 |
gagcttggttgtgtctttttgcgtggagcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcgggc |
25514694 |
T |
|
| Q |
221 |
catggcagaggcagcgtcgaggttgccggagcgaatc |
257 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
25514693 |
catggcagaggcagcgttgaggttgccggagcgaatc |
25514657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 232047 - 231998
Alignment:
| Q |
678 |
aattttaacgattatataaatgaggaacattgatcttatcatagtctctc |
727 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
232047 |
aattttaaccattagataaatgaggaacattgatcttatcatagtctctc |
231998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 736
Target Start/End: Original strand, 46707465 - 46707502
Alignment:
| Q |
699 |
gaggaacattgatcttatcatagtctctctgcattata |
736 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||| |
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| T |
46707465 |
gaggaacattgattttatcatagtctttctgcattata |
46707502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 723
Target Start/End: Original strand, 16689643 - 16689688
Alignment:
| Q |
678 |
aattttaacgattatataaatgaggaacattgatcttatcatagtc |
723 |
Q |
| |
|
||||||||| |||| ||||||||| |||||| |||||||||||||| |
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|
| T |
16689643 |
aattttaactattagataaatgagaaacattaatcttatcatagtc |
16689688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 736
Target Start/End: Complemental strand, 25329935 - 25329898
Alignment:
| Q |
699 |
gaggaacattgatcttatcatagtctctctgcattata |
736 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||| |
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| T |
25329935 |
gaggaacattgattttatcatagtctctctacattata |
25329898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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