View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_10 (Length: 513)
Name: NF6178_low_10
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 25527516 - 25527819
Alignment:
| Q |
18 |
gcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtgcaaat |
117 |
Q |
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| T |
25527516 |
gcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtacaaat |
25527615 |
T |
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| Q |
118 |
caagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25527616 |
caagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgattcgttgctgagaacgccgactggcg |
25527715 |
T |
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| Q |
218 |
ggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtggagttcttcaggaggaggctggggctccgccgttgctgct |
317 |
Q |
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| T |
25527716 |
ggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtggagttcttcaggaggaggctgaggctccgccgttgctgct |
25527815 |
T |
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| Q |
318 |
tgtt |
321 |
Q |
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|||| |
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| T |
25527816 |
tgtt |
25527819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 25535548 - 25535841
Alignment:
| Q |
21 |
tcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtgcaaatcaa |
120 |
Q |
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| T |
25535548 |
tcaatgcggccctcatcacaataagcattgataacaaagttataagagacaatgttaggagcaattttaaagaggttaaagaagaactcgtacaaatcaa |
25535647 |
T |
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| Q |
121 |
gagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcgggc |
220 |
Q |
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| T |
25535648 |
gagcttcattgtatcttttcgcacggtgcattgcagcaatgatagcattgcaggtgaacacagttggacgagttgttgctgagaacgtcgactggcgggc |
25535747 |
T |
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| Q |
221 |
catggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtggagttcttcaggaggaggctggggctccgccgttgct |
314 |
Q |
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| T |
25535748 |
catggcagaggcagcgtcgaggttgccggagcgaatcaacgatctgacgcgcgtgtggagttcttcaggaggaggctggggctccgccgttgct |
25535841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 25514893 - 25514657
Alignment:
| Q |
21 |
tcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagttaaagaagaactcgtgcaaatcaa |
120 |
Q |
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||||||| ||||||||||||||| || ||||| | |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
25514893 |
tcaatgcggccctcatcacaataggcattgataacaaagttatgagagacaatgttaggaacaattttaaacaagttaaagaagaactcgtacaaatcaa |
25514794 |
T |
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| Q |
121 |
gagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcgggc |
220 |
Q |
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|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514793 |
gagcttggttgtgtctttttgcgtggagcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgttgctgagaacgccgactggcgggc |
25514694 |
T |
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| Q |
221 |
catggcagaggcagcgtcgaggttgccggagcgaatc |
257 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
25514693 |
catggcagaggcagcgttgaggttgccggagcgaatc |
25514657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 381 - 501
Target Start/End: Original strand, 25527879 - 25527999
Alignment:
| Q |
381 |
tggcgacagagtgacattgttgagtttgaaaccctaaaatttcgtactttctaatttgaaatgaaaatgaaatgaattcttctaacatctttcttcttat |
480 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527879 |
tggcgaaagagtgacattgttgagtttgaaaccctaaaatttcgtactttctattttgaaatgaaaatgaaatgaattcttctaacatctttcttcttat |
25527978 |
T |
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| Q |
481 |
atatactacccccagcagaat |
501 |
Q |
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|||||||||| |||||||||| |
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| T |
25527979 |
atatactaccaccagcagaat |
25527999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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