View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_11 (Length: 512)
Name: NF6178_low_11
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Complemental strand, 9299657 - 9299165
Alignment:
| Q |
16 |
atacgaaaatggaaatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttca |
115 |
Q |
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| T |
9299657 |
atacgaaaatggaaatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttca |
9299558 |
T |
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| Q |
116 |
agcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgat |
215 |
Q |
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| T |
9299557 |
agcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgat |
9299458 |
T |
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| Q |
216 |
gcagtatacaagatcagattcaatgattctttcgctatccgaatcagcaacataaattggacatgatgtcatattttgtgcttcgtacacttgagagtag |
315 |
Q |
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| T |
9299457 |
gcagtatacaagatcagattcaatgatactatcgctatccgaataagcaacataaattggacatgatgtcatattttgtgcttcgtacacttgattgtag |
9299358 |
T |
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| Q |
316 |
cttcagagttgtacaactgaagaacaattgaagaaactgatatt---------------tccggagatataaggcttaacaggaaaaattgatgaaaagt |
400 |
Q |
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| T |
9299357 |
cttctgagttgtacaactgaagaacaattgaagaaactgatatttctagatacagaatatccggagagataaggcttaaaaggaaaaattgatgaaaagt |
9299258 |
T |
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| Q |
401 |
tgtggtcaagtaagagctgtggtaaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtgaggatgagtttca |
493 |
Q |
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| T |
9299257 |
tgtggtcaagtaagagttgtggtaaacaatttccaggatcagataaatctattcttgggtctgtataatcaatgtcagtgaggatgagtttca |
9299165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 59 - 289
Target Start/End: Original strand, 9258096 - 9258326
Alignment:
| Q |
59 |
ctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
158 |
Q |
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|||||||||||||||||| ||||| |||| | ||| | | ||| |||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||| |
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| T |
9258096 |
ctgcagaggataaaataacgaatgtaatcttcttcttcgatttatgttcacatttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagag |
9258195 |
T |
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| Q |
159 |
tatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgattctttcgctatccgaa |
258 |
Q |
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| T |
9258196 |
acggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagtatactaagtcagattcaacgatattttcaaggtctgaa |
9258295 |
T |
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| Q |
259 |
tcagcaacataaattggacatgatgtcatat |
289 |
Q |
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| T |
9258296 |
tcggcgacataaattggacaagatatcatat |
9258326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 445
Target Start/End: Original strand, 9467665 - 9467735
Alignment:
| Q |
375 |
cttaacaggaaaaattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagata |
445 |
Q |
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| T |
9467665 |
cttaaaaggaaaatttgatgaaaaattgcggtcaagtaagagttgtggaagacagtttccaggatcagata |
9467735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 9258442 - 9258507
Alignment:
| Q |
387 |
aattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagataaatctat |
452 |
Q |
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| T |
9258442 |
aattgatgaaaagttgtggtcaaataagagttgcggtaaacaatttctggtatcagatagatctat |
9258507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 9467363 - 9467418
Alignment:
| Q |
103 |
tgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
158 |
Q |
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| T |
9467363 |
tgtttacatttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag |
9467418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 9170673 - 9170609
Alignment:
| Q |
381 |
aggaaaaattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagata |
445 |
Q |
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| T |
9170673 |
aggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagata |
9170609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 9171020 - 9170928
Alignment:
| Q |
55 |
tcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccat |
147 |
Q |
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|||||||| |||| |||| |||||| || ||||| ||| ||| ||||| |||||||||||||||| || |||||||||||||||| ||||| |
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| T |
9171020 |
tcacctgctgaggttaaagtaatgagtgttatcctcttctttgttttgttctcacatttcaagcatcttatgtcaaaatttgttccagaccat |
9170928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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