View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_13 (Length: 505)

Name: NF6178_low_13
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_13
NF6178_low_13
[»] chr6 (6 HSPs)
chr6 (4-413)||(30521206-30521614)
chr6 (413-486)||(30521099-30521172)
chr6 (305-377)||(10791687-10791759)
chr6 (305-377)||(10795925-10795997)
chr6 (304-375)||(8875691-8875762)
chr6 (278-334)||(11333273-11333329)
[»] chr4 (12 HSPs)
chr4 (178-377)||(3461052-3461249)
chr4 (178-377)||(11652302-11652499)
chr4 (303-376)||(26984700-26984773)
chr4 (303-376)||(26998773-26998846)
chr4 (304-377)||(49106563-49106636)
chr4 (305-377)||(49108668-49108740)
chr4 (305-377)||(50077234-50077306)
chr4 (178-349)||(21503706-21503875)
chr4 (303-376)||(48205832-48205905)
chr4 (303-375)||(41013579-41013651)
chr4 (178-231)||(26984578-26984630)
chr4 (300-370)||(26982549-26982616)
[»] chr1 (19 HSPs)
chr1 (178-377)||(33988070-33988267)
chr1 (278-377)||(14654348-14654447)
chr1 (278-377)||(14664139-14664238)
chr1 (278-377)||(14669717-14669816)
chr1 (278-377)||(14683750-14683849)
chr1 (278-377)||(14706088-14706187)
chr1 (278-377)||(14708578-14708677)
chr1 (303-377)||(14652525-14652599)
chr1 (303-377)||(14662316-14662390)
chr1 (303-377)||(14674481-14674555)
chr1 (303-377)||(14676632-14676706)
chr1 (303-377)||(14679859-14679933)
chr1 (278-375)||(14681601-14681698)
chr1 (305-377)||(28366234-28366306)
chr1 (305-377)||(38175565-38175637)
chr1 (278-377)||(14716291-14716390)
chr1 (303-377)||(14667144-14667218)
chr1 (278-374)||(11872489-11872585)
chr1 (304-371)||(37422175-37422242)
[»] chr8 (12 HSPs)
chr8 (178-382)||(37682052-37682255)
chr8 (178-377)||(40054312-40054510)
chr8 (180-377)||(41841064-41841259)
chr8 (304-377)||(44878983-44879056)
chr8 (304-377)||(44880865-44880938)
chr8 (304-375)||(37679757-37679828)
chr8 (303-377)||(10944432-10944506)
chr8 (306-360)||(44582870-44582924)
chr8 (304-377)||(42220880-42220952)
chr8 (278-377)||(42555091-42555190)
chr8 (304-346)||(42092051-42092093)
chr8 (334-377)||(42872514-42872557)
[»] chr5 (8 HSPs)
chr5 (305-381)||(7524964-7525040)
chr5 (278-377)||(3643640-3643739)
chr5 (304-377)||(1716486-1716559)
chr5 (304-373)||(4103249-4103318)
chr5 (304-344)||(5350672-5350712)
chr5 (178-251)||(3643765-3643837)
chr5 (178-247)||(7525097-7525166)
chr5 (306-351)||(19261152-19261197)
[»] chr2 (22 HSPs)
chr2 (278-377)||(2841025-2841124)
chr2 (303-377)||(32918080-32918154)
chr2 (182-377)||(43850049-43850243)
chr2 (303-375)||(30733990-30734062)
chr2 (278-377)||(30732008-30732107)
chr2 (304-377)||(9032053-9032126)
chr2 (197-377)||(9026786-9026966)
chr2 (178-375)||(19232309-19232504)
chr2 (310-377)||(9008021-9008088)
chr2 (310-377)||(8973312-8973379)
chr2 (310-377)||(8979322-8979389)
chr2 (310-377)||(9023447-9023514)
chr2 (304-377)||(9020847-9020920)
chr2 (300-370)||(10763908-10763978)
chr2 (310-377)||(8984693-8984760)
chr2 (310-375)||(8988457-8988522)
chr2 (315-370)||(9030405-9030460)
chr2 (308-375)||(6471747-6471813)
chr2 (310-377)||(8992148-8992215)
chr2 (197-268)||(9008130-9008201)
chr2 (310-377)||(9016493-9016563)
chr2 (304-373)||(35701893-35701962)
[»] scaffold0549 (1 HSPs)
scaffold0549 (197-260)||(5512-5575)
[»] chr7 (2 HSPs)
chr7 (198-257)||(8128610-8128671)
chr7 (304-377)||(27134511-27134584)
[»] chr3 (1 HSPs)
chr3 (329-375)||(15758562-15758608)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Complemental strand, 30521614 - 30521206
Alignment:
Q  4 gagagatgaatattgaatactatgtatattaacaagtgaacactttttagcttaaagatatgctgtctatttttcttgatttgcgatagataacattctg 103  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30521614 gagaaatgagtattgaatactatgtatattaacaagtgaacactttttagcttaaagatatgctgtctatttttcttgatttgcgatagataacattctg 30521515  T
Q  104 taaatcaacaaatgatgtaaaataaaagtctaaaacatgatagcgaatgttatagaaatcttgaacttggtttgggtggggtgcgccaggccgatgcaat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30521514 taaatcaacaaatgatgtaaaataaaagtctaaaacatgatagcgaatgttatagaaatcttgaacttggtttgggtggggtgcgccaggccaatgcaat 30521415  T
Q  204 agtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnntaaattgaatatcgtgtgaggcgatgat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||       |||||||||||||||||||||||||| |    
T  30521414 agtgcaaagcaaagacgacacttgagagacccaatagcaagctatagtagtggactctccccctc-aaaaaataaattgaatatcgtgtgaggcgatggt 30521316  T
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatgacttgtttagctgctcaatgctgcatt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  30521315 ccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatgatttgtttagctgctcaatgctgcatt 30521216  T
Q  404 tatatcagac 413  Q
    ||||||||||    
T  30521215 tatatcagac 30521206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 413 - 486
Target Start/End: Complemental strand, 30521172 - 30521099
Alignment:
Q  413 ccaatgtgggacttctatgcagcagcttttaacactgtctgttcaaattcaaaattcagctattcattcctaac 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30521172 ccaatgtgggacttctatgcagcagcttttaacactgtctgttcaaattcaaaattcagctattcattcctaac 30521099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 10791687 - 10791759
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  10791687 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 10791759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 10795925 - 10795997
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  10795925 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 10795997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 8875762 - 8875691
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||| |||| ||||    
T  8875762 ccacatatcagatattaaattgataagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 11333329 - 11333273
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaaca 334  Q
    |||| ||||||||||||  || ||  |||||||||||||||||||||||||||||||    
T  11333329 aatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 3461052 - 3461249
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    ||||||||| ||||| || |||||||||||||| ||| |||||||||| |||| ||||||||||||||||||| | |||  || ||||||        ||    
T  3461052 ggtggggtgtgccag-cctatgcaatagtgcaacgcatagacgacactcgagaaacccaatagcaagctattgaaatggcttctcccccttaaaaaagta 3461150  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    | || ||||||||||||  |  |||  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3461151 attt-aatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 3461249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 11652302 - 11652499
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    ||||||||||||||| || ||||||||||||||  || || |||||||  |||  |||||||||||||||||| |||||  || |||||||       ||    
T  11652302 ggtggggtgcgccagccc-atgcaatagtgcaacacataggcgacactcaagaagcccaatagcaagctattggagtggcttctccccctcaaaaaaata 11652400  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    | || ||||||||||||  |  ||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  11652401 attt-aatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 11652499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 26984700 - 26984773
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  26984700 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 26998773 - 26998846
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  26998773 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 49106563 - 49106636
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  49106563 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 49106636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 49108668 - 49108740
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  49108668 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 49108740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 50077234 - 50077306
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  50077234 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 50077306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 21503875 - 21503706
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    ||||||||||||||| || |||||||||||||| ||| |  ||||||||||||    |||||||||||||||||  ||   || |||||||       ||    
T  21503875 ggtggggtgcgccag-cctatgcaatagtgcaacgcataagcgacacttgagaagttcaatagcaagctattgtgatgacttctccccctcaaaaaaata 21503777  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgat 349  Q
    | || ||||||||||||     ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21503776 attt-aatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 48205905 - 48205832
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatg 376  Q
    ||||||||| |||||||||| | ||||||||||||||||||||| ||||  || ||||||||||||||||||||    
T  48205905 tccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 41013579 - 41013651
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    ||||||||||||||||||||| |||||||||| ||| || |||| ||||   |||||||||||||||| ||||    
T  41013579 tccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaagtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 26984578 - 26984630
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagag 231  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||||    
T  26984578 ggtgggatgcgccagccc-atgcaatagtgcaacgcaaaggcgacacttgagag 26984630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 26982616 - 26982549
Alignment:
Q  300 tgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaa 370  Q
    |||||||||||| ||||| |||||| ||||   ||||| |||||||||||||  ||||| |||||||||||    
T  26982616 tgatccacatattagatactaaactaataa---cagatgctacacttgatcttagccaagaggccgagaaa 26982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 377
Target Start/End: Complemental strand, 33988267 - 33988070
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    ||||||||||||| ||||  |||||||||||| |||| |  |||||||||| | ||||||||||||||||||| | ||| ||| ||||||        ||    
T  33988267 ggtggggtgcgcc-ggcctttgcaatagtgcagagcataagcgacacttgaaaaacccaatagcaagctattgaaatggcctctcccccttaaaaaagta 33988169  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    | || ||||||||||||  |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  33988168 attt-aatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 33988070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 14654348 - 14654447
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14654348 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14654447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 14664139 - 14664238
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14664139 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14664238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 14669717 - 14669816
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14669717 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14669816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 14683849 - 14683750
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14683849 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14683750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 14706187 - 14706088
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14706187 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14706088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 14708677 - 14708578
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14708677 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14708578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 14652599 - 14652525
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14652599 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 14662390 - 14662316
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14662390 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 14674555 - 14674481
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14674555 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14674481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 14676706 - 14676632
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14676706 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14676632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 14679933 - 14679859
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14679933 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14679859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 14681698 - 14681601
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    |||| ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  14681698 aatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 14681601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 28366234 - 28366306
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28366234 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 28366306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 38175565 - 38175637
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  38175565 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 38175637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 14716390 - 14716291
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14716390 aatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14716291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 14667144 - 14667218
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14667144 tccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 11872489 - 11872585
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggta 374  Q
    |||| ||||||||||||  |  ||| |||||||||| |||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||    
T  11872489 aatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 37422242 - 37422175
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaag 371  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||||||    
T  37422242 ccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 178 - 382
Target Start/End: Complemental strand, 37682255 - 37682052
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    ||||||| ||||||| || |||||||||||||| | ||||| ||||||||||||||| |||||||||||||| | |||||||| |  |||         |    
T  37682255 ggtggggcgcgccagaccaatgcaatagtgcaacgtaaagatgacacttgagagacctaatagcaagctattttggtggactctcatcctaaaaaaac-a 37682157  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| |||||||||||   |  ||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T
Q  378 cttgt 382  Q
     ||||    
T  37682056 tttgt 37682052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 377
Target Start/End: Complemental strand, 40054510 - 40054312
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    |||||||||||||| ||  ||||||||||||||  || |  |||||||| |||  |||||||||||||||||| ||||| ||| |||||||       ||    
T  40054510 ggtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtggcctctccccctcaaaaaagta 40054411  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    | || |||||||| |||  |  ||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  40054410 attt-aatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 180 - 377
Target Start/End: Original strand, 41841064 - 41841259
Alignment:
Q  180 tggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnntaaa 279  Q
    ||||||||||||| || ||||||||||||||  || || ||||||| ||||  ||||||||||||||||||  ||||  || |||| ||       |||     
T  41841064 tggggtgcgccagccc-atgcaatagtgcaacacataggcgacactcgagaagcccaatagcaagctattggggtggcttctccccatcaaaaaagtaat 41841162  T
Q  280 ttgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    || ||||||||||||  |  ||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  41841163 tt-aatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 41841259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 44879056 - 44878983
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44879056 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 44878983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 44880865 - 44880938
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44880865 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 44880938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 37679828 - 37679757
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  37679828 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 10944432 - 10944506
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  10944432 tccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatga 10944506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 44582924 - 44582870
Alignment:
Q  306 acatatcagatattaaactgataagaacagatactacacttgatctccgccaaaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  44582924 acatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 42220880 - 42220952
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||| |||| ||| ||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatga 42220952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 42555091 - 42555190
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  ||| |||||||||| ||||||||||||||| ||||||| || ||||||||||  ||||||||  | ||||||||||||    
T  42555091 aatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatga 42555190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 42092093 - 42092051
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacactt 346  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  42092093 ccacatatcagatattaaactgataagaacaaatattacactt 42092051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 42872514 - 42872557
Alignment:
Q  334 agatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatga 42872557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 7525040 - 7524964
Alignment:
Q  305 cacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatgacttg 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  7525040 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgacttg 7524964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 3643739 - 3643640
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  | |||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3643739 aatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 3643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 1716486 - 1716559
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  1716486 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 1716559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 4103318 - 4103249
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||| || |||||||||    
T  4103318 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgctgagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 5350712 - 5350672
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacac 344  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  5350712 ccacatatcagatattaaactgataacaatagatactacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 3643837 - 3643765
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgt 251  Q
    ||||||||||||||| || ||||||||||||||  || |  | ||||| |||| ||||||||||||||||||||    
T  3643837 ggtggggtgcgccag-ccaatgcaatagtgcaacacataagcaacactcgagaaacccaatagcaagctattgt 3643765  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 7525166 - 7525097
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagcta 247  Q
    |||||||||||||  ||| |||||||||||||| |||  |||||||| ||||| |||||  |||||||||    
T  7525166 ggtggggtgcgcctagcccatgcaatagtgcaacgcatggacgacacatgagaaacccagcagcaagcta 7525097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 19261152 - 19261197
Alignment:
Q  306 acatatcagatattaaactgataagaacagatactacacttgatct 351  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatct 19261197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 2841025 - 2841124
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  2841025 aatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 2841124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 32918154 - 32918080
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  32918154 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 32918080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 377
Target Start/End: Complemental strand, 43850243 - 43850049
Alignment:
Q  182 gggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnntaaatt 281  Q
    |||||||||| ||| |||||||||||||| ||| || |||||| | |||   ||||||||||||||||| ||||  ||| |||||||       | | ||    
T  43850243 gggtgcgccaagcctatgcaatagtgcaacgcataggcgacacattagaagtccaatagcaagctattgaagtgacctctccccctcaaaaaagtgattt 43850144  T
Q  282 gaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
     |||||| |||||  |  ||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  43850143 -aatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 43850049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 30734062 - 30733990
Alignment:
Q  303 tccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  30734062 tccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 30733990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 30732107 - 30732008
Alignment:
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| ||||||||||||  |  || ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30732107 aatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 30732008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 9032126 - 9032053
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatga 9032053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 197 - 377
Target Start/End: Complemental strand, 9026966 - 9026786
Alignment:
Q  197 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnntaaattgaatatcgt-gtgag 295  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||||||||| | ||| ||| ||| |||       ||| || ||||  || ||||     
T  9026966 atgcaatagtgcaaagcataggcgacacttgagaaacccaatagcaagctattgaaatggtctctcccactcaaaaaagtaattt-aatactgttgtgac 9026868  T
Q  296 gcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
     |  ||  ||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  9026867 ccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 9026786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 178 - 375
Target Start/End: Original strand, 19232309 - 19232504
Alignment:
Q  178 ggtggggtgcgccaggccgatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctcnnnnnnnta 277  Q
    |||||||||||||| ||  |||||||||||||| ||| |   |||||||||||  |||||||||||||||||| |||||  || |||||||       ||    
T  19232309 ggtggggtgcgccaagcttatgcaatagtgcaacgcataagtgacacttgagaagcccaatagcaagctattgaagtggcttctccccctcaaaaaggta 19232408  T
Q  278 aattgaatatcgtgtgaggcgatgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    | || ||||| ||||||  | |||   |||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  19232409 attt-aatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 9008088 - 9008021
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  9008088 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 9008021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 8973379 - 8973312
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  8973379 atcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 8973312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 8979389 - 8979322
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 8979322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 9023514 - 9023447
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  9023514 atcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 9023447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 9020920 - 9020847
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  9020920 ccacatctcagatattaaattgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 9020847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 10763908 - 10763978
Alignment:
Q  300 tgatccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaa 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  | |||||| ||||||||    
T  10763908 tgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaaa 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 8984760 - 8984693
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||| |||||||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatga 8984693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 8988522 - 8988457
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||    
T  8988522 atcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggccaagaatggtat 8988457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 9030460 - 9030405
Alignment:
Q  315 atattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaa 370  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||    
T  9030460 atattaaattgataagaacagatactacacttgatcttagccaaaaggccaagaaa 9030405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 6471747 - 6471813
Alignment:
Q  308 atatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||  ||||||||| ||| ||||||||    
T  6471747 atatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaaaggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 8992215 - 8992148
Alignment:
Q  310 atcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||| |||| ||||||||| ||||||||||||||||  |||||||| | |||||||| ||||    
T  8992215 atcagatattgaactcataagaacatatactacacttgatcttagccaaaagactgagaaaggcatga 8992148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 9008201 - 9008130
Alignment:
Q  197 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactcaccccctc 268  Q
    |||||||||||||||||| || |||||||||||| |||||||| |||| ||||| | ||| ||| |||||||    
T  9008201 atgcaatagtgcaaagcataggcgacacttgagaaacccaataacaagttattgaaatggcctctccccctc 9008130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 9016563 - 9016493
Alignment:
Q  310 atcagatattaaact---gataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    |||||||||||||||   ||||||||||||||||||| |||||||  ||||||||| |||  |||||||||    
T  9016563 atcagatattaaactactgataagaacagatactacatttgatcttagccaaaaggtcgaataaggtatga 9016493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 35701962 - 35701893
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggt 373  Q
    |||||||||| |||||||||| |||| |||| |||| |||||||||||  ||||||| |  |||||||||    
T  35701962 ccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaaagttgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 5575 - 5512
Alignment:
Q  197 atgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctattgtagtggactc 260  Q
    |||||| ||||||  |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  5575 atgcaacagtgcatcgcaaaggcgacacttgagagacccaatagcaagctattgtggtggactc 5512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 8128671 - 8128610
Alignment:
Q  198 tgcaatagtgcaaagcaaagacgacacttgagagaccca--atagcaagctattgtagtgga 257  Q
    |||||||||||||  ||||||||||||||||||||||||  ||||||||||||||| |||||    
T  8128671 tgcaatagtgcaacacaaagacgacacttgagagacccaatatagcaagctattgtggtgga 8128610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 27134584 - 27134511
Alignment:
Q  304 ccacatatcagatattaaactgataagaacagatactacacttgatctccgccaaaaggccgagaaaggtatga 377  Q
    ||||||||||||||||||||  |||||||||||||||| | |||||||  |  |||||||||| ||||||||||    
T  27134584 ccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaaggccgaaaaaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  329 agaacagatactacacttgatctccgccaaaaggccgagaaaggtat 375  Q
    |||||||||| ||||||||||||  |||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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