View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_15 (Length: 486)
Name: NF6178_low_15
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_15 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 23068625 - 23068250
Alignment:
| Q |
1 |
cataggtgtatagtatttttagcactttgtgctgaacgctatcctatactcctaacaaaaagaagatttttgaaaaattnnnnnnnnnn-gcggattaat |
99 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
23068625 |
catatgtgtatagtattgttagcactttgtgctgaacgctatcctatactcctaacaaaaagaggatttttgaaaaattaaaaaaacaaagcggattaat |
23068526 |
T |
|
| Q |
100 |
tttagcaattggcgctcaacaaatttccaatttcctctcctctttcacacacgaccttcatctgtatcaacccacatctcaccctcttctcttatctcaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |
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| T |
23068525 |
tttagcaattggcgctcaacaaatttccaattccctctcttctttcacacacgaccttcatttgtatcaacccacatctcaccttcttctctcatctcaa |
23068426 |
T |
|
| Q |
200 |
taccatcgaattgcgtaaccaccacctccattgaatcccataactgccaccaccatcaaaccccacttccaaccccatctctctcatacccagaccccca |
299 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23068425 |
taccatcgaattgcataaccaccacctccattgaatcccataactgccaccaccatcaaaccccacttctaaccccatctctctcatacccagaccccca |
23068326 |
T |
|
| Q |
300 |
tctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
375 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23068325 |
tctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
23068250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 23068199 - 23068154
Alignment:
| Q |
426 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgtt |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23068199 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgtt |
23068154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 2 - 375
Target Start/End: Original strand, 25808791 - 25809165
Alignment:
| Q |
2 |
ataggtgtatagtatttttagcactttgtgctgaacgctatcctatactcctaacaaaaagaagatttttgaaaaattnnnnnnnnnngcggattaa-tt |
100 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||| || |
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| T |
25808791 |
ataggtggatagtattgttagcactttgtgctgaacgctatcctatactcctaacaaaacgggggtttttgaaaaattaaaaaaaaaagcggattaactt |
25808890 |
T |
|
| Q |
101 |
ttagcaattggcgctcaacaaatttccaatttcctctcctctttcacacacgaccttcatctgtatcaacccacatctcaccctcttctcttatctcaat |
200 |
Q |
| |
|
||||||||||||| | |||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
25808891 |
ttagcaattggcgttgaacagattttcaattccctctcttctttcacacacgaccttcatctgtatcaacccacatctcaccttcttctctcatctcaat |
25808990 |
T |
|
| Q |
201 |
accatcgaattgcgtaaccaccacctccattgaatcccataactgccaccaccatcaaaccccacttccaaccccatctctctcatacccagacccccat |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25808991 |
accatcgaattgcataaccaccacctccattgaatcccataactgtcaccatcatcaaaccccacttctaaccccatctctctcatacccagacccccat |
25809090 |
T |
|
| Q |
301 |
ctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25809091 |
ctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
25809165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 25809216 - 25809261
Alignment:
| Q |
426 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgtt |
471 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
25809216 |
cccaaaatctgagctgtttgtcaatttcttgtgatactattttgtt |
25809261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 135445 - 135829
Alignment:
| Q |
1 |
cataggtgtatagtatttttagcactttgtgctgaacgctatcctatactcctaacaaaaagaagatttttgaaaaattnnnnnnnnnn---------gc |
91 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || |
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| T |
135445 |
cataggtggatagtattgttagcactttgtgctgaacgctatcctatactcctaacaaaaagggggtttttgaaaaaaaaaaaaaaaaaaaaaaaaaagc |
135544 |
T |
|
| Q |
92 |
ggattaa-ttttagcaattggcgctcaacaaatttccaatttcctctcctctttcacacacgaccttcatctgtatcaacccacatctcaccctcttctc |
190 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
135545 |
ggattaacttttagcaattggcgctgaacagatttccaattccctctcttctttcacacacgaccttcatctgtatcaacccacatctcaccttcttctc |
135644 |
T |
|
| Q |
191 |
ttatctcaataccatcgaattgcgtaaccaccacctccattgaatcccataactgccaccaccatcaaaccccacttccaaccccatctctctcataccc |
290 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
135645 |
tcatctcaataccatcgaattgcataaccaccacctcaattgaatcccataactgacaccaacatcaaaccccacttctaaccccatctctctcataccc |
135744 |
T |
|
| Q |
291 |
agacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
375 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
135745 |
agacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
135829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 135880 - 135925
Alignment:
| Q |
426 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
135880 |
cccaaaatctgagctgtttttcaattttttgtgatactattttgtt |
135925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 20746369 - 20746446
Alignment:
| Q |
299 |
atctcattgaactccacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| |
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|
| T |
20746369 |
atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtat |
20746446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 20746498 - 20746543
Alignment:
| Q |
426 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgtt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
20746498 |
cccaaaatctgagctgtttttcaatttcttgtaatacggttttgtt |
20746543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 26909178 - 26909102
Alignment:
| Q |
300 |
tctcattgaactccacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
26909178 |
tctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtat |
26909102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 26909050 - 26909005
Alignment:
| Q |
426 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26909050 |
cccaaaatctgagctgtttttcaatttcttgtgatacggttttgtt |
26909005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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