View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_17 (Length: 477)
Name: NF6178_low_17
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Original strand, 48475249 - 48475692
Alignment:
| Q |
13 |
aatatcgtgtcacgaaccattaaacaaatgagttgacatgtggaaaaatttaatgggtacctgtttgttgattagagaaacaacgaacttgattgttgtt |
112 |
Q |
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| T |
48475249 |
aatatcgtgtcacgaaccattaaacaaatgagttgacatgtggaaaaatttaataggtacctgtttgttgattagagaaacaacgaacttgattgttgtt |
48475348 |
T |
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| Q |
113 |
tctgctctcaaatccgcacatgcgatcttgtaattcgcaatatctacaatccggtgaagaccatgttagttcaagatcttcactgaagttgtttnnnnnn |
212 |
Q |
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| T |
48475349 |
tctgctctcaaatccgcacatgcgatcttgtaattcgcaatatctacaatccggtgaagaccatgttagttcaagatcttcactgaagttgtttaaaaaa |
48475448 |
T |
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| Q |
213 |
nnttccggatatgaacttgcaactggaactgaaaaatttctaatgatgtagcaagactgaggcaatgaattggtgaagctcggtgaaggaatagctgata |
312 |
Q |
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| T |
48475449 |
aattccggatatgaacttgcaactggaactgaaaaatttctaatgatgtagcaagactgaggcaatgaattggtgaagctcagtgaaggaatagctgata |
48475548 |
T |
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| Q |
313 |
caaaatgcgtagagttgctaagacagtcagcaagtgtgaattgtgatcctaacatgttcggagttgagcagcttaagagagtgtagttagtaagaagttc |
412 |
Q |
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| T |
48475549 |
caaaatgcgtagagttgctgagacagt---caagtgtgaattgtgatcctaacatgttcggagttgagcagcttaagacagtgtagttagtaagaagttc |
48475645 |
T |
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| Q |
413 |
ggtaacgaaaggtgaacctgaaaggttgagacttagaagacgatttg |
459 |
Q |
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| T |
48475646 |
ggtaacgaaaggtgaacctgaaaggttgagacttagaagacgatttg |
48475692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 76 - 307
Target Start/End: Original strand, 48472716 - 48472947
Alignment:
| Q |
76 |
tttgttgattagagaaacaacgaacttgattgttgtttctgctctcaaatccgcacatgcgatcttgtaattcgcaatatctacaatccggtgaagacca |
175 |
Q |
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|||| |||| |||||||||||| || |||| || |||||||||| ||| | ||||||| | ||| |||| |||||||||||||||||| ||||||| |
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| T |
48472716 |
tttggtgatgagagaaacaacggacatgatcattatttctgctcttgaatgcacacatgctttaatgttattcacaatatctacaatccggtaaagacca |
48472815 |
T |
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| Q |
176 |
tgttagttcaagatcttcactgaagttgtttnnnnnnnnttccggatatgaacttgcaactggaactgaaaaatttctaatgatgtagcaagactgaggc |
275 |
Q |
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| T |
48472816 |
tgttagttcaagatcttcactgaggttgtctaagaaaaattccggataagaatttgcaattggaactgagagctttttaatcacatagcaagactgaggc |
48472915 |
T |
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| Q |
276 |
aatgaattggtgaagctcggtgaaggaatagc |
307 |
Q |
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| T |
48472916 |
aatgaattggtgaagctcaatgagggaatagc |
48472947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 48472316 - 48472381
Alignment:
| Q |
394 |
tgtagttagtaagaagttcggtaacgaaaggtgaacctgaaaggttgagacttagaagacgatttg |
459 |
Q |
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| T |
48472316 |
tgtagttagccagaaattcggtaatgaaaggtgaacctgaaaggttgaggcttagaagacgatttg |
48472381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 370 - 459
Target Start/End: Original strand, 48472969 - 48473060
Alignment:
| Q |
370 |
tcggagttgagcagcttaagagagtgta--gttagtaagaagttcggtaacgaaaggtgaacctgaaaggttgagacttagaagacgatttg |
459 |
Q |
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| T |
48472969 |
tcggagttgagcaacttaaaagggtatatagctagtaagaaaatcagtaaagaaaggtgaacctgaagggttgagacttagaagacgatttg |
48473060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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