View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6178_low_18 (Length: 466)
Name: NF6178_low_18
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 7157978 - 7158426
Alignment:
| Q |
17 |
atatacttcatccgatctttt-tataagagacaaatgaattaattaaaatcgatgtatttggttcggttcataacatcgatcaaatacatcagattttgt |
115 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7157978 |
atatactccatccgatcttttttataagagacaaataaattaattaaaatcgatgtatttggttcggttcataacatcgatcaaatacattagattttgt |
7158077 |
T |
|
| Q |
116 |
tgattcatctgtcttctataaaaagggtctgagaaagtaacatgatataatataaaatgcacaatctctaatacaaacttattatataataaatactaat |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7158078 |
cgattcatctgtcttctataaaaaaggtctgagaaagtaacatgatataatataaaatgcacaatctctaatacaaacttattatattataaatactaat |
7158177 |
T |
|
| Q |
216 |
tttcgcatgaaaaacttataaaatattattgaataatcttttaaaacaaatcacaagtcactcttgatataaaatattttctttctttgttattattgaa |
315 |
Q |
| |
|
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7158178 |
ttgcacatgaaaaacttataaagtattattgaataatcttttaaaacaaatcacaagtcactcttgatataaaatattttctttctttgttattattgaa |
7158277 |
T |
|
| Q |
316 |
actaagttaattaatt-aaaagatagtaattaattactaacccaaccagtcatcttgactctacggcagaattcaacgtcactccagcaagtttcatcaa |
414 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7158278 |
actaaattaattaattaaaaagatagtaattaaatactaacccaaccagtcatcttgactctacggcagaattcgacgtcactccagcaagtttcatcaa |
7158377 |
T |
|
| Q |
415 |
tgacagaattttgttgctcagtaacatccaaagttccagctgatgatgt |
463 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7158378 |
ttacagaattttgttgctcagtaacatccaaagttccagctgatgatgt |
7158426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 34741746 - 34741709
Alignment:
| Q |
163 |
taatataaaatgcacaatctctaatacaaacttattat |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34741746 |
taatataaaatgcacaagttctaatacaaacttattat |
34741709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University