View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_20 (Length: 449)
Name: NF6178_low_20
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 7618103 - 7618265
Alignment:
| Q |
273 |
tatatgcaggtatggtaaaatttacaaatcaaacttgtttggtggaccaacaatagtttcagcagatgcaggattgaataggttcatattacaaaatgaa |
372 |
Q |
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| T |
7618103 |
tatatgcaggtatggtaaaatttacaaatcaaacttgtttggtggaccaacaatagtttcagcagatgcaggattgaataggttcatattacaaaatgaa |
7618202 |
T |
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| Q |
373 |
gggaaattatttgagtgcagttatcctagtagcattggtggaatacttgggaaatggtctatg |
435 |
Q |
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| T |
7618203 |
gggaaattatttgagtgcagttatcctagtagcattggtggaatacttgggaaatggtctatg |
7618265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 7617891 - 7618027
Alignment:
| Q |
61 |
aaacaaaacaagccaaacccaaccttaatcttccaccaggaagaatgggttggcctttcattggagaaactattggttacttgaagccttattctgctac |
160 |
Q |
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| T |
7617891 |
aaacaaaacaagccaaacccaaccttaatcttccaccaggaagaatgggttggcctttcattggagaaactattggttacttgaagccttattctgctac |
7617990 |
T |
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| Q |
161 |
aactataggaaaatttatggaacaacacatagcaagg |
197 |
Q |
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| T |
7617991 |
aactataggaaaatttatggaacaacacatagcaagg |
7618027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 277 - 431
Target Start/End: Complemental strand, 33107730 - 33107576
Alignment:
| Q |
277 |
tgcaggtatggtaaaatttacaaatcaaacttgtttggtggaccaacaatagtttcagcagatgcaggattgaataggttcatattacaaaatgaaggga |
376 |
Q |
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| T |
33107730 |
tgcaggtatgggacaatttacaagtcaaatttgtttggagggccagctattgtatcagcagatgcagaattgaataggttcatattacaaaatgatggaa |
33107631 |
T |
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| Q |
377 |
aattatttgagtgcagttatcctagtagcattggtggaatacttgggaaatggtc |
431 |
Q |
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| T |
33107630 |
aattgtttgagtgtagctatccaaaaagcattggtggaatacttggaaaatggtc |
33107576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 33108122 - 33108011
Alignment:
| Q |
86 |
taatcttccaccaggaagaatgggttggcctttcattggagaaactattggttacttgaagccttattctgctacaactataggaaaatttatggaacaa |
185 |
Q |
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| T |
33108122 |
taatcttccacctggaaaaatgggatggccctttataggagaaaccattggttatttgaagccttacactgccaccacaatgggagaatttatggaaaat |
33108023 |
T |
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| Q |
186 |
cacatagcaagg |
197 |
Q |
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| T |
33108022 |
cacatagcaagg |
33108011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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