View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_21 (Length: 445)

Name: NF6178_low_21
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_21
NF6178_low_21
[»] chr2 (2 HSPs)
chr2 (1-427)||(8020915-8021336)
chr2 (324-404)||(22791940-22792020)
[»] chr3 (33 HSPs)
chr3 (4-427)||(28151733-28152153)
chr3 (1-423)||(17744134-17744549)
chr3 (1-423)||(19045454-19045869)
chr3 (214-426)||(28037523-28037737)
chr3 (195-427)||(8539081-8539318)
chr3 (4-338)||(11421393-11421725)
chr3 (4-254)||(27920463-27920708)
chr3 (1-122)||(30993721-30993842)
chr3 (1-122)||(27954559-27954680)
chr3 (7-122)||(8538745-8538860)
chr3 (267-421)||(11421077-11421232)
chr3 (1-258)||(27430606-27430870)
chr3 (1-122)||(28037895-28038016)
chr3 (304-427)||(28186002-28186127)
chr3 (266-396)||(27458741-27458873)
chr3 (324-427)||(28161959-28162064)
chr3 (304-427)||(28479797-28479922)
chr3 (304-427)||(28508980-28509105)
chr3 (5-124)||(28479483-28479602)
chr3 (1-122)||(28163032-28163153)
chr3 (324-427)||(28150050-28150155)
chr3 (239-335)||(26139089-26139185)
chr3 (239-338)||(28162792-28162891)
chr3 (5-124)||(28508666-28508785)
chr3 (239-340)||(26110202-26110303)
chr3 (235-340)||(26127278-26127383)
chr3 (1-122)||(28057568-28057689)
chr3 (1-122)||(28067993-28068114)
chr3 (213-257)||(18076983-18077027)
chr3 (49-122)||(18078903-18078976)
chr3 (235-340)||(26177328-26177433)
chr3 (239-311)||(26204494-26204566)
chr3 (34-98)||(28136724-28136788)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-414)||(1836-2245)
[»] scaffold0257 (2 HSPs)
scaffold0257 (312-427)||(19160-19277)
scaffold0257 (1-98)||(19507-19604)
[»] scaffold1142 (1 HSPs)
scaffold1142 (249-340)||(530-621)


Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 8021336 - 8020915
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021336 aaatcagtcaacagagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 8021237  T
Q  101 ctctttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatttnnnnnnnntgatgcaataaaata 200  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  8021236 ctctttgagaaggttcccctgaga-----gtacatgaaataatgtttatgcatatttgagcactagaaaattaattttaaaaaaatgatgcaataaaata 8021142  T
Q  201 ccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021141 ccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttg 8021042  T
Q  301 atcttactttcatgacatcgtcatcatttagagaaactgagaaaaggtgagaaagaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8021041 atcttactttcatgacatcgtcatcatttagagaaactgagaaaaggtgggaaagaagaaggttaacttcaaaatgaaaagggcgatgagataacttaag 8020942  T
Q  401 aaaagaaaaccgatccaaagattcttc 427  Q
    |||||||||||||||||||||||||||    
T  8020941 aaaagaaaaccgatccaaagattcttc 8020915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 22792020 - 22791940
Alignment:
Q  324 tcatttagagaaactgagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaa 404  Q
    ||||||||||||||||| || ||  |||| |||||| || ||||||||||||| |||||||  |||||||||| ||||||||    
T  22792020 tcatttagagaaactga-aatagtggagagagaagagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaa 22791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 427
Target Start/End: Complemental strand, 28152153 - 28151733
Alignment:
Q  4 tcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcatctc 103  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||  |||||||   |||||||||||||||||||||||     
T  28152153 tcagtcaacaaagacaatttctcaatagccaaatgattattggagactagattctcaagctccccggtgacaacaaaagaagaacttaaatcttcatcta 28152054  T
Q  104 tttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatttnnnnnnnntgat-gcaataaaatacc 202  Q
    |||||||||| |||||||| |     ||| | |||| |||  |||||||||||| ||||| || |||||||||           |  | |||||||||||    
T  28152053 tttgagaagggtcccctgaaa-----gtataggaaagaataattatgcatatttaagcacaagtaaattaattaaaaataaaacaaagaaataaaatacc 28151959  T
Q  203 ttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgat 302  Q
    || || || |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||| ||||| | |||||| | |||| |||||||     
T  28151958 ttcagaaggctttgaaggaaactgagatgcaatagaagagggtcttgatttggaaactaatatgttatcatcctttgaaaactgatcctcagtatttgag 28151859  T
Q  303 cttactttcatgacatcgtcatcatttagagaaactgagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaaga 401  Q
    ||| ||||||||||||  |||||||||||||||||||| ||||| || |||| |||| || | ||||||||||| |||||||||||||||||||||||||    
T  28151858 cttgctttcatgacattatcatcatttagagaaactgacaaaagatgggaaacaagagagctaaacttcaaaataaaaagggcgatgaggtaacttaaga 28151759  T
Q  402 aaagaaaaccgatccaaagattcttc 427  Q
    ||| |||| |||||||||||||||||    
T  28151758 aaataaaagcgatccaaagattcttc 28151733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 17744134 - 17744549
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    ||||||||||| |||||||| ||||||  | | ||||| |||||||| ||||| |  |||||||||||  ||||||   |||||||||| |||||||| |    
T  17744134 aaatcagtcaaaaaagacaagttctcataatcgaaatgcttcttggagactagttgatcaagctccctcttgacaaacaaagaagaactgaaatcttctt 17744233  T
Q  101 ctctttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatttnnnnnnnntgatgcaataaaata 200  Q
       |||||||||| ||| |||| |     ||| | |||| |||  ||| || ||||||||||| ||||||||||||         ||| |||||||||||    
T  17744234 ---tttgagaagggtcctctgaaa-----gtataggaaagaataattaagcctatttgagcacaagaaaattaatt-agataaaatgaagcaataaaata 17744324  T
Q  201 ccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttg 300  Q
    |||  ||||| |||||||||| |||| ||| ||||| |||| ||| ||||||||||||||||||||||||| |  || ||||| || | |||||||||||    
T  17744325 cctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatttg 17744424  T
Q  301 atcttactttcatgacatcgtcatcatttagagaaact-gagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaactta 398  Q
    | ||||||||||  ||||| |||||||||||||||||| || ||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||    
T  17744425 agcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttcaaaatgaaaagagcgatgaggtaactta 17744524  T
Q  399 agaaaagaaaaccgatccaaagatt 423  Q
    |||||| |||| |||||||||||||    
T  17744525 agaaaataaaatcgatccaaagatt 17744549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 19045454 - 19045869
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    ||||||||||| |||||||| ||||||  | | ||||| |||||||| ||||| |  |||||||||||  ||||||   |||||||||| |||||||| |    
T  19045454 aaatcagtcaaaaaagacaagttctcataatcgaaatgcttcttggagactagttgatcaagctccctcttgacaaacaaagaagaactgaaatcttctt 19045553  T
Q  101 ctctttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatttnnnnnnnntgatgcaataaaata 200  Q
       |||||||||| ||| |||| |     ||| | |||| |||  ||| || ||||||||||| ||||||||||||         ||| |||||||||||    
T  19045554 ---tttgagaagggtcctctgaaa-----gtataggaaagaataattaagcctatttgagcacaagaaaattaatt-agataaaatgaagcaataaaata 19045644  T
Q  201 ccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttg 300  Q
    |||  ||||| |||||||||| |||| ||| ||||| |||| ||| ||||||||||||||||||||||||| |  || ||||| || | |||||||||||    
T  19045645 cctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatttg 19045744  T
Q  301 atcttactttcatgacatcgtcatcatttagagaaact-gagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaactta 398  Q
    | ||||||||||  ||||| |||||||||||||||||| || ||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||    
T  19045745 agcttactttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttcaaaatgaaaagagcgatgaggtaactta 19045844  T
Q  399 agaaaagaaaaccgatccaaagatt 423  Q
    |||||| |||| |||||||||||||    
T  19045845 agaaaataaaatcgatccaaagatt 19045869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 214 - 426
Target Start/End: Complemental strand, 28037737 - 28037523
Alignment:
Q  214 ttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcat 313  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||| || ||||| ||||| | |||||| | |||||||||||| |||||||||||    
T  28037737 ttgaaggaaaatgagatgcaatagaagagggtcttgatttggaaactaacatgtcatcatccttagaaaactgatcctcaatatttgaacttactttcat 28037638  T
Q  314 gacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaag-aaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaacc 411  Q
    |||||  ||||||||| || |||||| | | ||||||  |||||||  || | ||||||||||||||||||| ||||||||||||| |||||| || ||     
T  28037637 gacattatcatcatttggataaactgaacagaaggtggaaaagaagcgagttaaacttcaaaatgaaaagggtgatgaggtaactttagaaaataacact 28037538  T
Q  412 gatccaaagattctt 426  Q
    |||||||||| ||||    
T  28037537 gatccaaagagtctt 28037523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 427
Target Start/End: Original strand, 8539081 - 8539318
Alignment:
Q  195 aaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaa 294  Q
    |||||||||| || || |||||||||| ||||||||  |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||  | || ||    
T  8539081 aaaataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaa 8539180  T
Q  295 tatttgatcttactttcatgacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaaga-aggttaacttc---aaaatgaaaagggcgatga 389  Q
    ||||||| |||||||||||| || | |||||||||||| || ||| | ||| |||| ||||||||| || | ||||||   ||||||||||||| ||  |    
T  8539181 tatttgagcttactttcatggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaa 8539280  T
Q  390 ggtaacttaagaaaagaaaaccgatccaaagattcttc 427  Q
    ||||||||||||||| ||||| ||||||| ||||||||    
T  8539281 ggtaacttaagaaaataaaactgatccaaggattcttc 8539318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 11421725 - 11421393
Alignment:
Q  4 tcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcc---cttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||   ||||||||||  ||||||      |||||||||     
T  11421725 tcagtcaacaaagacaagttctcaatagccaaatggttcttggaaactagattctcaagctcctcccttgtgacaacccaagaa------aaatcttcaa 11421632  T
Q  101 ctctttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatttnnnnnnnn------tgatgcaat 194  Q
    || |||||||||| |||||||| |     ||| | ||||||||  ||||||||||||  |||| | ||||| || ||              ||| |||||    
T  11421631 ctatttgagaagggtcccctgaaa-----gtataggaaataataattatgcatatttatgcacaataaaataaaattaattaaaaataaactgaagcaat 11421537  T
Q  195 aaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaa 294  Q
    |||||||||| |  ||  ||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||| ||| | |||||||||| ||||     
T  11421536 aaaataccttcaacaggttttaaaggatactgagatgcaatataagagggtcttgatttggaaactaatatatcatcatccgtaggaaactgttcctcag 11421437  T
Q  295 tatttgatcttactttcatgacatcgtcatcatttagagaaact 338  Q
    ||||||||||||||||| ||| | | ||||||||| ||||||||    
T  11421436 tatttgatcttactttcttgaaagcatcatcatttcgagaaact 11421393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 27920708 - 27920463
Alignment:
Q  4 tcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcatctc 103  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||| |||| ||||   |||| ||||||| ||||| ||||     
T  27920708 tcagtcaacaaagacaagttctcaatagccaaatgcttcttggagactagattctcaagctcctttgtcacaaccaaagatgaacttagatctttatcta 27920609  T
Q  104 tttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatt-tnnnnnnnntgatgcaataaaatacc 202  Q
    |||||||||| |||||     ||| |||| | |||| |||  |||||||||||||||||  |||||| |||||          |||  ||||||||||||    
T  27920608 tttgagaagggtcccc-----tgaaagtataggaaagaataattatgcatatttgagca-aagaaaactaattaaaaataaaatgaaacaataaaatacc 27920515  T
Q  203 ttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttg 254  Q
    || || || |||||||||| |||||||| |||||||||||| ||||||||||    
T  27920514 ttcagaaggctttgaaggaaactgagatgcaatagaagaggttcttgatttg 27920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30993842 - 30993721
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    ||||| ||||||||  |||| || |||||||||||||  |||||||| ||||||||||||||||||| ||||||||   |||||||||||||||||||||    
T  30993842 aaatccgtcaacaagtacaagttatcaatagctaaatacttcttggagactagattctcaagctcccctgtgacaaccaaagaagaacttaaatcttcat 30993743  T
Q  101 ctctttgagaaggttcccctga 122  Q
    || |||||||||| ||||||||    
T  30993742 ctatttgagaagggtcccctga 30993721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27954680 - 27954559
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    |||||||||||||||||||| ||||||||||| ||||| || ||||| | || ||| |||||||||||||||||||   || |||||||||||||| |||    
T  27954680 aaatcagtcaacaaagacaagttctcaatagccaaatgcttattggagattatattttcaagctcccttgtgacaaccaaataagaacttaaatctccat 27954581  T
Q  101 ctctttgagaaggttcccctga 122  Q
    || |||||||||| ||||||||    
T  27954580 ctatttgagaagggtcccctga 27954559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 8538745 - 8538860
Alignment:
Q  7 gtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcatctcttt 106  Q
    |||||||| ||||  || |||||||| |||||||||||||| |||||||| |||||||||||||||||||   |||||||| ||||||||||||||  ||    
T  8538745 gtcaacaaggacatgttatcaatagccaaatgattcttggagactagattttcaagctcccttgtgacaaccaaagaagaaattaaatcttcatctaatt 8538844  T
Q  107 gagaaggttcccctga 122  Q
    ||||||| ||||||||    
T  8538845 gagaagggtcccctga 8538860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 11421232 - 11421077
Alignment:
Q  267 tcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactgagaaaaggtgagaaagaaga-aggtta 365  Q
    ||||| ||||| || || ||||||||||||||||  ||| ||||||||||| | ||||||||||||| |||||| |||  ||| ||||||||| || | |    
T  11421232 tcatcatccttaggtaaatgttgctcaatatttgtgcttgctttcatgacagcatcatcatttagagcaactgacaaacagtgggaaagaagagagttca 11421133  T
Q  366 acttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 421  Q
    ||||| |||||||||||| ||||  |||||||||||||| ||||| ||||||||||    
T  11421132 acttctaaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaaga 11421077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 27430606 - 27430870
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| || ||| ||||||||    |||| ||||| |||| |||||    
T  27430606 aaatcagtcaacaaagacaagttctcgatagccaaatgattcttggagactagattctcgagttcctttgtgacagccaaagacgaactaaaatattcat 27430705  T
Q  101 ctctttgaga------aggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatttnnnnnnnn-tgatgcaa 193  Q
    || |||||||      |||||||||||  |  | |||| |  | |  ||  |||||| || || ||||| ||||||||||||          ||| ||||    
T  27430706 ctatttgagattgagaaggttcccctgtaagtatagtaaagaacaatataattatgcctacttcagcacaagaaaattaattaaaactacaatgaagcaa 27430805  T
Q  194 taaaataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaa 258  Q
    ||||||| ||| || || ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  27430806 taaaataacttcagcaggctttgaaggacactgagatgcaatataagagggtcttgatttggaaa 27430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28038016 - 28037895
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    |||||||||||||||||||| || |||||||| ||||| ||||| || |||||||||||||| |||  | ||||||   ||||| |||||||| |||  |    
T  28038016 aaatcagtcaacaaagacaaattatcaatagccaaatgcttcttagagactagattctcaagttccgctttgacaaccaaagaataacttaaagcttttt 28037917  T
Q  101 ctctttgagaaggttcccctga 122  Q
    || |||||||||| ||||||||    
T  28037916 ctatttgagaagggtcccctga 28037895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 427
Target Start/End: Complemental strand, 28186127 - 28186002
Alignment:
Q  304 ttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaaga 401  Q
    ||||||| || ||| | ||||||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||    
T  28186127 ttacttttataacagcatcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaaga 28186028  T
Q  402 aaagaaaaccgatccaaagattcttc 427  Q
    ||| ||||  |||||||||| |||||    
T  28186027 aaataaaattgatccaaagagtcttc 28186002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 396
Target Start/End: Original strand, 27458741 - 27458873
Alignment:
Q  266 ttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggtt 364  Q
    |||||| || || |||||||| | |||||||||||| |||||||| |||||| | ||||||||||||||||||||  |||| ||   |||||||| ||||    
T  27458741 ttcatcatcgttaggaaactgattctcaatatttgagcttacttttatgacagcatcatcatttagagaaactgaacaaaaagttgcaaagaagagggtt 27458840  T
Q  365 aa-cttcaaaatgaaaagggcgatgaggtaact 396  Q
    || ||||||||||||||||| ||| || |||||    
T  27458841 aaacttcaaaatgaaaagggtgataagataact 27458873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 28162064 - 28161959
Alignment:
Q  324 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 421  Q
    |||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||||||||    
T  28162064 tcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaaga 28161965  T
Q  422 ttcttc 427  Q
     |||||    
T  28161964 gtcttc 28161959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 28479797 - 28479922
Alignment:
Q  304 ttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaaga 401  Q
    ||||||| ||||||   |||||||||| |||||||||| |||||||| || ||||||   |||| |||||||||| |||||| |||||||||| ||||||    
T  28479797 ttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttcaaaatgcaaagggtgatgaggtaaattaaga 28479896  T
Q  402 aaagaaaaccgatccaaagattcttc 427  Q
    ||| ||||  |||||||||| |||||    
T  28479897 aaataaaattgatccaaagagtcttc 28479922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 28508980 - 28509105
Alignment:
Q  304 ttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaaga 401  Q
    ||||||| ||||||   |||||||||| |||||||||| |||||||| || ||||||   |||| |||||||||| |||||| |||||||||| ||||||    
T  28508980 ttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttcaaaatgcaaagggtgatgaggtaaattaaga 28509079  T
Q  402 aaagaaaaccgatccaaagattcttc 427  Q
    ||| ||||  |||||||||| |||||    
T  28509080 aaataaaattgatccaaagagtcttc 28509105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 28479483 - 28479602
Alignment:
Q  5 cagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcatctct 104  Q
    |||||||||||||||| ||||||  | | |||||||||||||| ||||| | ||||||||| ||  ||||||   |||||||||||||||||||  |  |    
T  28479483 cagtcaacaaagacaagttctcacaatccaaatgattcttggagactagttcctcaagctcactcttgacaagcaaagaagaacttaaatcttctacatt 28479582  T
Q  105 ttgagaaggttcccctgaga 124  Q
    ||||||||| || |||||||    
T  28479583 ttgagaagggtctcctgaga 28479602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28163153 - 28163032
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgc-aagaagaacttaaatcttca 99  Q
    |||||||||||||||||||| || |||  | | ||||| |||||||| ||||| | ||||||||||||  |||| |||| |||||||||| ||||||||     
T  28163153 aaatcagtcaacaaagacaagttatcataatcgaaatgcttcttggagactagttgctcaagctccctcttgac-atgcaaagaagaactgaaatcttct 28163055  T
Q  100 tctctttgagaaggttcccctga 122  Q
     || |||||||||| ||||||||    
T  28163054 actttttgagaagggtcccctga 28163032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 28150155 - 28150050
Alignment:
Q  324 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 421  Q
    |||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||| ||||    
T  28150155 tcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaaga 28150056  T
Q  422 ttcttc 427  Q
     |||||    
T  28150055 ctcttc 28150050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 26139089 - 26139185
Alignment:
Q  239 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaa 335  Q
    ||||||| | ||||| ||||||| ||| ||||| ||| | |||||||||| |||||||||||| ||||||||| ||| |   |||||||||||||||    
T  26139089 agagggtttagatttagaaactattatatcatcatccataggaaactgttcctcaatatttgagcttactttcttgaaagaatcatcatttagagaa 26139185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 338
Target Start/End: Complemental strand, 28162891 - 28162792
Alignment:
Q  239 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact 338  Q
    ||||||| | ||||||||||||| ||| |||||   ||| ||||| |||| |||||||||||| ||||||||| ||| | | ||||||||| ||||||||    
T  28162891 agagggtttagatttggaaactattatatcatcaatcttaggaaattgttcctcaatatttgagcttactttcttgaaagcatcatcatttcgagaaact 28162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 28508666 - 28508785
Alignment:
Q  5 cagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcatctct 104  Q
    |||||||||||||||| ||||||  | | |||| ||||||||| ||||| | ||||||||| ||  ||||||   |||||||||||||||||||  |  |    
T  28508666 cagtcaacaaagacaagttctcacaatccaaataattcttggagactagttgctcaagctcactcttgacaagcaaagaagaacttaaatcttctacatt 28508765  T
Q  105 ttgagaaggttcccctgaga 124  Q
    ||||||||| || |||||||    
T  28508766 ttgagaagggtctcctgaga 28508785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 26110202 - 26110303
Alignment:
Q  239 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact 338  Q
    ||||||| | ||||||||||||| ||| ||||| ||||| | ||| |||| |||||||||||| ||||||||| ||| |   |||| |||||||||| ||    
T  26110202 agagggtttagatttggaaactattatatcatcatccttagaaaattgttcctcaatatttgagcttactttcttgaaagaatcatgatttagagaacct 26110301  T
Q  339 ga 340  Q
    ||    
T  26110302 ga 26110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 26127278 - 26127383
Alignment:
Q  235 tagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagaga 334  Q
    ||||||||||| | ||||||||||||| ||| | ||| |||||  |||| |||| |||||||||||| ||||||||| ||| |   |||| |||||||||    
T  26127278 tagaagagggtttagatttggaaactattatattatcatccttatgaaattgttcctcaatatttgagcttactttcttgaaagaatcatgatttagaga 26127377  T
Q  335 aactga 340  Q
    | ||||    
T  26127378 acctga 26127383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28057689 - 28057568
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    |||||||||||||||||||  ||||||  | | ||||| |||||||| | ||| | ||||||||||||  ||||||   |||||||||| ||||||||      
T  28057689 aaatcagtcaacaaagacacgttctcataatccaaatgcttcttggagagtagttgctcaagctccctcttgacaagcaaagaagaactgaaatcttcta 28057590  T
Q  101 ctctttgagaaggttcccctga 122  Q
    || ||||||||||  |||||||    
T  28057589 ctttttgagaaggaacccctga 28057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28068114 - 28067993
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    |||||||||||||||||||  ||||||  | | ||||| |||||||| | ||| | ||||||||||||  ||||||   |||||||||| ||||||||      
T  28068114 aaatcagtcaacaaagacacgttctcataatccaaatgcttcttggagagtagttgctcaagctccctcttgacaagcaaagaagaactgaaatcttcta 28068015  T
Q  101 ctctttgagaaggttcccctga 122  Q
    || ||||||||||  |||||||    
T  28068014 ctttttgagaaggaacccctga 28067993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 18076983 - 18077027
Alignment:
Q  213 tttgaaggacactgagattcaatagaagagggtcttgatttggaa 257  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  18076983 tttgaaggaaactgagatgcaatagaagagggtcgtgatttggaa 18077027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 18078903 - 18078976
Alignment:
Q  49 actagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcatctctttgagaaggttcccctga 122  Q
    ||||| |||||||||||||| | |||||   ||||||||||||||||||| ||| | |||||||  ||||||||    
T  18078903 actagtttctcaagctccctcgcgacaagcaaagaagaacttaaatcttcttctatatgagaagagtcccctga 18078976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 26177328 - 26177433
Alignment:
Q  235 tagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagaga 334  Q
    ||||||||||| | ||||||||||||| ||| | ||| |||||  |||| |||| ||||||| |||| ||||||||| ||| |   |||| |||||||||    
T  26177328 tagaagagggtttagatttggaaactattatattatcatccttatgaaattgttcctcaataattgagcttactttcttgaaagaatcatgatttagaga 26177427  T
Q  335 aactga 340  Q
    | ||||    
T  26177428 acctga 26177433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 26204494 - 26204566
Alignment:
Q  239 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 311  Q
    ||||||| | ||||||||||||| ||| ||| | || |||| ||| | || ||||||||||||||||||||||    
T  26204494 agagggtttagatttggaaactattatatcaccatcattggtaaaattttcctcaatatttgatcttactttc 26204566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 28136788 - 28136724
Alignment:
Q  34 aaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttc 98  Q
    |||||||||||||| ||||| | ||||||||| ||  ||||||   |||||||||||||||||||    
T  28136788 aaatgattcttggagactagttgctcaagctcactcttgacaaacaaagaagaacttaaatcttc 28136724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 2245 - 1836
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttcat 100  Q
    |||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||   |||||| |||||||||  |||||| |||||||||||||||    
T  2245 aaatcagtcaacaaagacaagttctcaatagccaaataattctcggaaactagattccgtagctcctttgtgacaacccaagaataacttaaatcttcat 2146  T
Q  101 ctctttgagaaggttcccctgagatgagagtacatgaaataatgtttatgcatatttgagcactagaaaattaatt-tnnnnnnnntgatgcaataaaat 199  Q
    ||||||||||||| || ||     ||| |||| | | ||||||  |||||||||||| ||||| ||||||||||||          ||| ||||||||||    
T  2145 ctctttgagaagggtcacc-----tgaaagtataggtaataataattatgcatattttagcacaagaaaattaattaaaactaaaatgaagcaataaaat 2051  T
Q  200 accttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatattt 299  Q
    |||||||| || ||||||||||||||||||| |||||| | || |  ||||||||||||||||||||||||| |||||  |||| || | |||||||| |    
T  2050 accttgagcaggctttgaaggacactgagatacaatagtacagagctttgatttggaaactaatatttcatcatccttaagaaattgatcctcaatatct 1951  T
Q  300 gatcttactttcatgacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaagaaggttaacttcaaaatgaaaagggcgatgaggtaactta 398  Q
    || ||||||||||||| | | |||||||||| | |||||| | |||| ||| |||| ||| ||   ||||||||||||||||||| |||| |||||||||    
T  1950 gagcttactttcatgatagcatcatcatttaaaaaaactgaacaaaatgtgggaaataag-agtcaaacttcaaaatgaaaagggtgatgtggtaactta 1852  T
Q  399 agaaaagaaaaccgat 414  Q
    |||||| |||||||||    
T  1851 agaaaataaaaccgat 1836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 427
Target Start/End: Complemental strand, 19277 - 19160
Alignment:
Q  312 atgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaactt-caaaatgaaaagggcgatgaggtaacttaagaaaagaaaa 409  Q
    |||||| |||| |||||||||||||||||  |||||||| || ||||||  ||||| || |||||||||||||| |||||||||||||||||||| || |    
T  19277 atgacaacgtcgtcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttcaaaatgaaaagggtgatgaggtaacttaagaaaataata 19178  T
Q  410 ccgatccaaagattcttc 427  Q
      |||||||||| |||||    
T  19177 ttgatccaaagagtcttc 19160  T

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Target: scaffold0257; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19604 - 19507
Alignment:
Q  1 aaatcagtcaacaaagacaatttctcaatagctaaatgattcttggaaactagattctcaagctcccttgtgacaatgcaagaagaacttaaatcttc 98  Q
    |||||||||||||||||||  ||||||  | | ||||| |||||||| | ||| | ||||||||||||  ||||||   |||||||||||||||||||    
T  19604 aaatcagtcaacaaagacatgttctcataatccaaatgcttcttggagagtagttgctcaagctccctcttgacaagcgaagaagaacttaaatcttc 19507  T

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Target: scaffold1142 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 621 - 530
Alignment:
Q  249 gatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactga 340  Q
    |||| ||||| || ||||||||| ||||| |||||||||| |||||||||| | ||||||||||||||| | || |||||||||| ||||||    
T  621 gattgggaaattattatttcatcatccttaggaaactgttcctcaatatttaagcttactttcatgacaacatcgtcatttagaggaactga 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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