View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_27 (Length: 411)
Name: NF6178_low_27
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 45123581 - 45123171
Alignment:
| Q |
1 |
tgagctgaagacagttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaaca |
100 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
45123581 |
tgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaaca |
45123482 |
T |
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| Q |
101 |
tttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggagac |
200 |
Q |
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| T |
45123481 |
tttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggagac |
45123382 |
T |
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| Q |
201 |
gaaactatgatcattgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagactagtcaaacactccattgatcccggtacacc |
300 |
Q |
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| T |
45123381 |
gaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagactagtcaaacactccattgaccccgatacacc |
45123282 |
T |
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| Q |
301 |
cacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataaaattcatatatatacttaaaatatttctgac |
400 |
Q |
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| T |
45123281 |
cacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataaaattcagatatatacttaaaatatttctgat |
45123182 |
T |
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| Q |
401 |
tgatgcatctt |
411 |
Q |
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| T |
45123181 |
tgatgtatctt |
45123171 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
213 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
260 |
Q |
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| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 35397399 - 35397459
Alignment:
| Q |
351 |
agtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatctt |
411 |
Q |
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| T |
35397399 |
agtataagagaaaaggaaaatgtcacatataaacttaaaatgtttctgactgatgcatctt |
35397459 |
T |
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