View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_3 (Length: 633)
Name: NF6178_low_3
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 174 - 615
Target Start/End: Complemental strand, 3609372 - 3608931
Alignment:
| Q |
174 |
gtcttttgatcaatataattttttatgtatcttactttcacttgatttataaagctcnnnnnnncttcttatgctcaaaatcttaatatggtatcagagc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
3609372 |
gtcttttgatcaatataattttttatgtatcttactttcacttgatttataaagctctttttttcttcttatgctcaaaattttaatatggtatcagagc |
3609273 |
T |
|
| Q |
274 |
ttggttgtgatcttcacgatgccgctatttcactgcgatttttcgagtgatcattgatccaccaacctttctcatggcctatgccattctctgccattta |
373 |
Q |
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||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3609272 |
ctggttgtgatcttcatgatgccgttatttcactgtgatttttcgagtgatcattgatccaccaacctttctcatggcctatgccattctctgccattta |
3609173 |
T |
|
| Q |
374 |
tggaagccttcaaaagtggaaaggaaattcacacctctgtcacttcttccatccactctcaaaaacaagaataagattaatgataaaaacgtgtttttag |
473 |
Q |
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| T |
3609172 |
tggaagccttcaaaagtggaaaggaaattcacacctctgtcacttcttccatccactctcaaaaacaagaataagattaatgataaaaacgtgcttttag |
3609073 |
T |
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| Q |
474 |
tgccatgtttccatcctctcagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagcca |
573 |
Q |
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| T |
3609072 |
tgccatgtttccatcctctcagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagcca |
3608973 |
T |
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| Q |
574 |
aaatcacggagacaatttccacatattttccatgtcttcttt |
615 |
Q |
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| T |
3608972 |
aaatcacggagacaatttccacatattttccatgtcttcttt |
3608931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 28451933 - 28451893
Alignment:
| Q |
93 |
ggggcattatgtatctgaatgcaagtccaagaaagttccaa |
133 |
Q |
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| T |
28451933 |
ggggcattatgcatctgaatgcaagtctaagaaagttccaa |
28451893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 33050193 - 33050290
Alignment:
| Q |
38 |
aaataaagaaagcttcgagaaagaatgagattcaatgatataatcttaaaaaatgggggcattatgtatctgaatgcaagtccaagaaagttccaagg |
135 |
Q |
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| T |
33050193 |
aaataaagaaagcttcgagaaagaaggagattcaatgatataatcttaaaaaatgggggcattatgtatctgaattcaagtccaagaaagttccaagg |
33050290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 39219773 - 39219705
Alignment:
| Q |
327 |
ttgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaa |
395 |
Q |
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| T |
39219773 |
ttgatccaccaagatttatcacggcctattccattctctgccatttatggaagatttcaaaaatggaaa |
39219705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 554
Target Start/End: Original strand, 15551251 - 15551339
Alignment:
| Q |
469 |
tttagtgccatgtttccatcctctcag---aacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagag |
554 |
Q |
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| T |
15551251 |
tttagtgctatgtttccgtcctctcagcagaacagcaacttggattcaaaattaagaattaaataagaaatagtggcttcctaggagag |
15551339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 588
Target Start/End: Original strand, 15584900 - 15584992
Alignment:
| Q |
493 |
cagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaa |
588 |
Q |
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|||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| || || ||||| |||||||||||| |
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| T |
15584900 |
cagaacaaaaacttggatccaaatttaagggttaaagaagaa---gtggcttccttggagagataccacattttgctgccaatgtcacggagacaa |
15584992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 36572294 - 36572237
Alignment:
| Q |
169 |
tcactgtcttttgatcaatataattttttatgtatcttactttcacttgatttataaa |
226 |
Q |
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| T |
36572294 |
tcactatcttttgatcaatataattttcaataaattttactttcacttgagttataaa |
36572237 |
T |
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