View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_30 (Length: 403)
Name: NF6178_low_30
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 47836838 - 47836461
Alignment:
| Q |
18 |
caagcctcagcaaaggcgagaggccaattgtagaaaaacacaactagtttttcgcgatacaaaggctaacatcacttttagaagacaaacttcaaatttt |
117 |
Q |
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| T |
47836838 |
caagcctcagcaaaggcgagaggacaattgtagaaaaacacaattagtttttcgcaatacaaaggctaacatcacttttagaagacaaacttcaaatttt |
47836739 |
T |
|
| Q |
118 |
aacttctaagtaaaaataaattctacaagcaaaatcaattttccttttaatcatccaacatgataaaatcaattcaacaatcacttttgattctccaaaa |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47836738 |
aacttc-aagtaaaaataaattctacaagcaaaatcaattttccttttaatcatcaaacatgataaaatcaattcaacaatcactttt-attctccaaaa |
47836641 |
T |
|
| Q |
218 |
atgaaaccaaatattatttatttattcattatagagaggagttgaaccaatacannnnnnngtaagcattaaattttgttgggctgatcttgaatgcccc |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47836640 |
atgaaaccaaatattatttatttattcattatagataggagttgaaccaatacatttctctttaagcattaaattttgttgggctgatcttgaatgcccc |
47836541 |
T |
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| Q |
318 |
taacctgccaatacctactattgtttactgataattgacaattctagattggcattgttggagatgtcgagaataatata |
397 |
Q |
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| T |
47836540 |
taacctgccaatacctactactgtttactggtaattgacaattctagattggcattgttggagatgtcgagaagaatata |
47836461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 29779138 - 29779202
Alignment:
| Q |
136 |
aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattcaacaatc |
199 |
Q |
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| T |
29779138 |
aattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctacaatc |
29779202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 17898212 - 17898274
Alignment:
| Q |
136 |
aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattcaacaa |
197 |
Q |
| |
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|||||||||||||||||||||| | |||| || ||||| ||||||||| ||||||||| |||| |
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| T |
17898212 |
aattctacaagcaaaatcaattatactttaaaccatccaaacatgatacaatcaattctacaa |
17898274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 1872308 - 1872365
Alignment:
| Q |
136 |
aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattc |
192 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| |
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|
| T |
1872308 |
aattctacaagcaaaatcaattttcttttaaatcatccaaacatgataaaaacaattc |
1872365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 11650798 - 11650840
Alignment:
| Q |
79 |
aaggctaacatcacttttagaagacaaacttcaaattttaact |
121 |
Q |
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|
| T |
11650798 |
aaggctaacatcacttttagaagtcaaactacaaattttaact |
11650840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 46870407 - 46870357
Alignment:
| Q |
148 |
aaaatcaattttccttttaatcatccaa-catgataaaatcaattcaacaa |
197 |
Q |
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|||||||||| |||||| |||||||||| ||||||||||||||||| |||| |
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|
| T |
46870407 |
aaaatcaattatcctttaaatcatccaaacatgataaaatcaattctacaa |
46870357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 1879158 - 1879094
Alignment:
| Q |
136 |
aattctacaagcaaaatcaattttccttttaatcatccaa-catgataaaatcaattcaacaatc |
199 |
Q |
| |
|
||||||||||| ||||| |||| || ||| | |||||||| ||||||||||||||||| |||||| |
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|
| T |
1879158 |
aattctacaagtaaaataaattctcttttaactcatccaaacatgataaaatcaattctacaatc |
1879094 |
T |
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