View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_32 (Length: 399)

Name: NF6178_low_32
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_32
NF6178_low_32
[»] chr2 (2 HSPs)
chr2 (14-333)||(4419963-4420282)
chr2 (157-258)||(4417909-4418010)
[»] chr1 (11 HSPs)
chr1 (194-330)||(30629519-30629655)
chr1 (194-325)||(30623888-30624019)
chr1 (283-333)||(40444682-40444732)
chr1 (205-315)||(30641730-30641840)
chr1 (197-255)||(30689730-30689788)
chr1 (197-259)||(30698616-30698678)
chr1 (197-255)||(30718773-30718831)
chr1 (287-330)||(18652894-18652937)
chr1 (197-255)||(30671835-30671893)
chr1 (197-255)||(30710499-30710557)
chr1 (194-267)||(18709026-18709099)
[»] chr3 (1 HSPs)
chr3 (195-252)||(33469977-33470034)
[»] chr7 (4 HSPs)
chr7 (274-330)||(38809648-38809704)
chr7 (205-330)||(38822597-38822722)
chr7 (206-248)||(38830756-38830798)
chr7 (194-328)||(38862397-38862531)
[»] chr5 (1 HSPs)
chr5 (195-254)||(25986001-25986060)
[»] chr4 (2 HSPs)
chr4 (188-252)||(34648874-34648938)
chr4 (196-253)||(49385786-49385843)
[»] chr6 (1 HSPs)
chr6 (195-259)||(4038752-4038816)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 4419963 - 4420282
Alignment:
Q  14 tcttcaatattcatcacatcaacaaattctcctctatcccttaatcctctcttccttgaatccaataaactttctctctttgtaacatcaataattcctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4419963 tcttcaatattcatcacatcaacaaattctcctctatcccttaatcctctcttccttgaatccaataaactttctctctttgtaacatcaacaattcctt 4420062  T
Q  114 tcttaccatatcctaaagcatttgtatttgcaacactctcaattgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagc 213  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420063 tcttaccatatcctaaagtatttgtatttgcaacactctcaattgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagc 4420162  T
Q  214 taaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccccatggcctt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4420163 taaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgatgaatctctaatttcagctgcatattttccccatggcctt 4420262  T
Q  314 ctccttactcctctataatg 333  Q
    ||||||||||||||||||||    
T  4420263 ctccttactcctctataatg 4420282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 4418010 - 4417909
Alignment:
Q  157 tgggaaattaagacatgcttttgaacctctaattctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaact 256  Q
    ||||||||||||  | || ||||||||||| ||| | ||||||||| |||||||||| | |||||||| ||||||||| |  ||||| |||||||| |||    
T  4418010 tgggaaattaagcaaagcctttgaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatact 4417911  T
Q  257 ct 258  Q
    ||    
T  4417910 ct 4417909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 330
Target Start/End: Original strand, 30629519 - 30629655
Alignment:
Q  194 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 293  Q
    ||||| |||| ||||||||||||||| |||  ||||||||||||||||||||||| |||||||||   ||| ||  | |  || ||||| ||||| ||||    
T  30629519 aaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctg 30629618  T
Q  294 catattttccccatggccttctccttactcctctata 330  Q
    |  ||||||||||||| |||||||| |||||||||||    
T  30629619 cgaattttccccatggtcttctcctaactcctctata 30629655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 325
Target Start/End: Original strand, 30623888 - 30624019
Alignment:
Q  194 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 293  Q
    ||||| |||| ||||||||||||||||||   ||||||||||||||||||||||| |||||||||   ||||||  |||  || ||||| ||||| ||||    
T  30623888 aaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctg 30623987  T
Q  294 catattttccccatggccttctccttactcct 325  Q
    |  ||||||||||||| ||||| || ||||||    
T  30623988 cgaattttccccatggtcttcttctaactcct 30624019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 40444682 - 40444732
Alignment:
Q  283 aatttcagctgcatattttccccatggccttctccttactcctctataatg 333  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  40444682 aatttctgcagcatattttccccatggccttctccttactcctctgtaatg 40444732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 30641840 - 30641730
Alignment:
Q  205 atcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccc 304  Q
    ||||||||||   |||||||||||||| ||||||||||| |||||||| | |||||  |||||| |||  |  || | |||||| |||||| ||||||||    
T  30641840 atcataagctcttgcagcttgttcagcagtatcaaatgttccaagccatattcttgtccctttccttgttgggtcacgaatttctgctgcaaattttccc 30641741  T
Q  305 catggccttct 315  Q
    ||||| |||||    
T  30641740 catggtcttct 30641730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 30689730 - 30689788
Alignment:
Q  197 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 255  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  30689730 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30689788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 30698616 - 30698678
Alignment:
Q  197 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 259  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||||||    
T  30698616 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactctt 30698678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 30718773 - 30718831
Alignment:
Q  197 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 255  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  30718773 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 30718831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 18652937 - 18652894
Alignment:
Q  287 tcagctgcatattttccccatggccttctccttactcctctata 330  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||    
T  18652937 tcagctgcaaatttcccccatggccttctccttacacctctata 18652894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 30671835 - 30671893
Alignment:
Q  197 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 255  Q
    ||||||| |||||||||||||||||| | ||||||  | |||||||| |||||||||||    
T  30671835 gcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac 30671893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 30710499 - 30710557
Alignment:
Q  197 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 255  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||    
T  30710499 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaac 30710557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 18709026 - 18709099
Alignment:
Q  194 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaaccttt 267  Q
    |||||||||||||||||||||   ||||||| |   ||||||||||| || |||||||| |||||||| |||||    
T  18709026 aaagcagctttatcataagcttttgcagcttctatggctgtatcaaaggttccaagccatactcttgatccttt 18709099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 33470034 - 33469977
Alignment:
Q  195 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagcca 252  Q
    ||||||||||||||||||| ||||| |||| ||||||||| ||||| |||||||||||    
T  33470034 aagcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagcca 33469977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 38809704 - 38809648
Alignment:
Q  274 cgaatctctaatttcagctgcatattttccccatggccttctccttactcctctata 330  Q
    |||||||| ||| || |||||| ||||||||||||||||| ||||||||||||||||    
T  38809704 cgaatctcgaatctctgctgcacattttccccatggccttatccttactcctctata 38809648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 38822722 - 38822597
Alignment:
Q  205 atcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctgcatattttccc 304  Q
    ||||||||||   |||||||  ||||| || | ||||||||||||||||||||  | ||| | | | | |||||||| ||| || || ||| ||||||||    
T  38822722 atcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccc 38822623  T
Q  305 catggccttctccttactcctctata 330  Q
    ||||||||| |||| |||||||||||    
T  38822622 catggccttatcctcactcctctata 38822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 38830798 - 38830756
Alignment:
Q  206 tcataagctaaagcagcttgttcagctgtatcaaatgtaccaa 248  Q
    ||||||||||||||||||  |||||||||||||||||| ||||    
T  38830798 tcataagctaaagcagctgcttcagctgtatcaaatgttccaa 38830756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 38862531 - 38862397
Alignment:
Q  194 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgacgaatctctaatttcagctg 293  Q
    ||||| |||| |||||||||||||||||||  ||| || || || ||||| |||| ||| |||||   ||||||  |||  |||||||| || || || |    
T  38862531 aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgcgg 38862432  T
Q  294 catattttccccatggccttctccttactcctcta 328  Q
    || ||||||||||||||||  | ||||||||||||    
T  38862431 caaattttccccatggcctagttcttactcctcta 38862397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 25986060 - 25986001
Alignment:
Q  195 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaa 254  Q
    |||||||| |||||||||| |||||||||| |||||| || ||||| |||||||||||||    
T  25986060 aagcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaa 25986001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 34648874 - 34648938
Alignment:
Q  188 attctcaaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagcca 252  Q
    ||||| |||||||||||||||||||| |  ||||| | ||||||||| | |||||||||||||||    
T  34648874 attctgaaagcagctttatcataagcaattgcagcctcttcagctgtttgaaatgtaccaagcca 34648938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 49385843 - 49385786
Alignment:
Q  196 agcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaa 253  Q
    ||||||| |||||||||| | |||||||| || ||| |||||||| ||||||||||||    
T  49385843 agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa 49385786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 4038816 - 4038752
Alignment:
Q  195 aagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 259  Q
    ||||||| | ||||||||||  |||||||| ||||||||||||||| || || | ||||||||||    
T  4038816 aagcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University