View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_33 (Length: 395)
Name: NF6178_low_33
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 6448921 - 6449293
Alignment:
| Q |
1 |
aaacataagcatcagtgcatcatcatcacaagtcaattacgatagaaatatatggctagaacatgcaacatcatgtttgttcttttcttgcttgagatgt |
100 |
Q |
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| T |
6448921 |
aaacataagcatcagtgcatcatcatcacaagtcaattacgatagaaatatatggctagaacatgcaacatcatgtttgttcttttcttgcttgagatgt |
6449020 |
T |
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| Q |
101 |
actatagttaatataaatgataattnnnnnnnnnnnnnnnnnntaaaccgacaatattacaaccttgagaacaaagggtgcatattacataaattcttga |
200 |
Q |
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| T |
6449021 |
actatagttaatataaatgataattaaaaaaggaaagaaaaaataaaccgacaatattacaaccttgagaacaaagggtgcatattacataaattcttga |
6449120 |
T |
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| Q |
201 |
tttaatagtagctatataaaattgtttgagatgtacgtattattatatagaggaaattaagggtagttaaatatatgttattataagacaaacacatgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6449121 |
tttaatagtagctatataaaattgtttgagatgtacgtattattatatagaggaaattaagggtagttaaatatatgttattataagacaaacacatgga |
6449220 |
T |
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| Q |
301 |
atattaatgagatgagatatagccaaagcatttgacaacataacaattgagccatagaacgacatgttgaccg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6449221 |
atattaatgagatgagatatagccaaagcatttgacaacataacaattgagccatagaacgacatgttgaccg |
6449293 |
T |
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