View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_35 (Length: 382)

Name: NF6178_low_35
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_35
NF6178_low_35
[»] chr5 (3 HSPs)
chr5 (281-366)||(32620679-32620764)
chr5 (175-270)||(41842335-41842431)
chr5 (281-366)||(43146795-43146880)
[»] chr3 (1 HSPs)
chr3 (282-356)||(25600218-25600291)
[»] chr4 (1 HSPs)
chr4 (170-220)||(35781791-35781842)
[»] chr6 (1 HSPs)
chr6 (194-253)||(4890397-4890457)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 32620764 - 32620679
Alignment:
Q  281 gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttgggagctagcttcc 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32620764 gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttgggagctagcttcc 32620679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 41842335 - 41842431
Alignment:
Q  175 atgataggaatcgataatgattcacttggagatgatacaagaggcgtgagaagatg-gggtaaaataaggatttattttgcaagtcggatatgttga 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  41842335 atgataggaatcgataatgattcacttggagatgatacaagaggcgtgagaagatgagggtaaaataaggatttattttgcaagtcggataggttga 41842431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 43146795 - 43146880
Alignment:
Q  281 gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttgggagctagcttcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43146795 gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttggaagctagcttcc 43146880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 25600218 - 25600291
Alignment:
Q  282 aggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttggga 356  Q
    |||| |||||||||| |||||||||| | ||||||||||||| ||||||||  |||||||| |||| ||||||||    
T  25600218 agggaaaaagtattattgcatttcataa-aaaccaagtcatacatacaaggtagtacatcatcatatgtttggga 25600291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 35781791 - 35781842
Alignment:
Q  170 agaagatgataggaatcgataa-tgattcacttggagatgatacaagaggcg 220  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||| |||||||    
T  35781791 agaagatgataggaatggataaatgaatcacttggagatgatacgagaggcg 35781842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 4890397 - 4890457
Alignment:
Q  194 attcacttggagatgatacaagaggcgtgagaagat-ggggtaaaataaggatttattttg 253  Q
    ||||||||||| ||||||  |||| | ||||||||| ||||||||||||||||| ||||||    
T  4890397 attcacttggaaatgataagagagacatgagaagattggggtaaaataaggattcattttg 4890457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University