View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_36 (Length: 381)
Name: NF6178_low_36
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 154 - 363
Target Start/End: Complemental strand, 3703212 - 3703002
Alignment:
| Q |
154 |
ttgtgtgtatacatttgcagaagttagattttattattggcatggactatcaaatatcttgataacaagtattattaagaagtgtgcttttaaaatactg |
253 |
Q |
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| T |
3703212 |
ttgtatgtatacatttgcagaagttagattttattattggcatggactatcaaatatcttgataagaagtattattaagaagtgtgcttttaaaatactg |
3703113 |
T |
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| Q |
254 |
atgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataatacatgaaacaaaagaatgttgcaa-ttttattaatt |
352 |
Q |
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| T |
3703112 |
atgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataatacatgaaagaaaagaatgttgcaatttttattaatt |
3703013 |
T |
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| Q |
353 |
gatctcttatt |
363 |
Q |
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| T |
3703012 |
gatctcttatt |
3703002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 3699475 - 3699354
Alignment:
| Q |
242 |
tttaaaatactgatgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataatacatgaaacaaaagaatgttgcaa |
341 |
Q |
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| T |
3699475 |
tttaaaacaatgatgtaactgaactatatcaattgatcttctaataaattgtaaactaggaatgatacaaaataatccatgaaacaaaagaatgttgcaa |
3699376 |
T |
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| Q |
342 |
ttttattaattgatctcttatt |
363 |
Q |
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| T |
3699375 |
ttttattaattgatctcttatt |
3699354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 3703420 - 3703386
Alignment:
| Q |
38 |
ggtaacatatgtggtagaaggaatgatgcaagtga |
72 |
Q |
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| T |
3703420 |
ggtaacatatgtggtagagggaatgatgcaagtga |
3703386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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