View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_4 (Length: 630)
Name: NF6178_low_4
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 148 - 433
Target Start/End: Original strand, 25933053 - 25933329
Alignment:
| Q |
148 |
tgaagtatgctaccagaatcagtaaaagtttcattttctttttcgtattagataagattatggcaacgaataattgttgaatcacctacattttttaatg |
247 |
Q |
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| T |
25933053 |
tgaagtatgctaccagaatcagtaatagtttcattttctttttagtattagataagattatggcaacgaataatagttgaatcacctacattttttaatg |
25933152 |
T |
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| Q |
248 |
acatagtttatagggataatttcaattacaagcaatcgtagaaggatgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattg |
347 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25933153 |
gcatagtttatagggataatttcaattacaagc---------aggatgatgagtggggaaggaaaagtggtgtgtgtgacaggtgctaatggttttattg |
25933243 |
T |
|
| Q |
348 |
cttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcatccaagtcagtacttctttttcctt |
433 |
Q |
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| T |
25933244 |
cttcatggattgttaagtttctccttcaatgtggttacactgtcagagcaactgttcgtcacccaagtcagtgcttctttctcctt |
25933329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 493 - 624
Target Start/End: Original strand, 25933413 - 25933544
Alignment:
| Q |
493 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
592 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933413 |
caagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
25933512 |
T |
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| Q |
593 |
ttgactctgttgttgagggttgtgatgatgtc |
624 |
Q |
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| T |
25933513 |
ttgactctgttgttgagggttgtgatggtgtc |
25933544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 493 - 624
Target Start/End: Original strand, 26100932 - 26101063
Alignment:
| Q |
493 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
592 |
Q |
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||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26100932 |
caagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcct |
26101031 |
T |
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| Q |
593 |
ttgactctgttgttgagggttgtgatgatgtc |
624 |
Q |
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| T |
26101032 |
ttgactctgttgttgagggttgtgatggtgtc |
26101063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 25932757 - 25932876
Alignment:
| Q |
1 |
gtacttaataaaactcattgaacacatctgggctgtacaatgatgtcttgaatgcaccaaatggagccacttgtctaagcttttaccttgtcttcctcaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
25932757 |
gtacttaataaaactcattgaacaaatctgggccgtacaatgatggcttgaatgcaccaaattgtgccacttgtctaagcttttaccttgtcttcctcaa |
25932856 |
T |
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| Q |
101 |
cccaaatcactcacccctaa |
120 |
Q |
| |
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|||||||||||||||||||| |
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| T |
25932857 |
cccaaatcactcacccctaa |
25932876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 294 - 446
Target Start/End: Original strand, 26100697 - 26100849
Alignment:
| Q |
294 |
tgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcag |
393 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| | |
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| T |
26100697 |
tgatgagtggggaaggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccg |
26100796 |
T |
|
| Q |
394 |
agccactgttcgtcatccaagtcagtacttctttttccttcaaattctttctc |
446 |
Q |
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| T |
26100797 |
agccactgtccgtgacccaagtatgtgcatgtttttccttcaacttctttctc |
26100849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 293 - 433
Target Start/End: Original strand, 29548725 - 29548865
Alignment:
| Q |
293 |
atgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtca |
392 |
Q |
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|||| |||||| ||||| ||||| |||||||| ||||||||| ||||| |||||||||||| |||| |||||||| || ||||||||||| ||||| | |
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| T |
29548725 |
atgaagagtggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgtta |
29548824 |
T |
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| Q |
393 |
gagccactgttcgtcatccaagtcagtacttctttttcctt |
433 |
Q |
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| T |
29548825 |
gagccactgttcgtgaccctagtcagtgcttctttctcctt |
29548865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 511 - 603
Target Start/End: Original strand, 29548958 - 29549050
Alignment:
| Q |
511 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgtt |
603 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| ||||| |||||| |
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| T |
29548958 |
aaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgtt |
29549050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 305 - 420
Target Start/End: Original strand, 29554904 - 29555019
Alignment:
| Q |
305 |
gaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttc |
404 |
Q |
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|||||||||||||| ||||| || |||||| |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
29554904 |
gaaggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttc |
29555003 |
T |
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| Q |
405 |
gtcatccaagtcagta |
420 |
Q |
| |
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|| |||||||| |||| |
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| T |
29555004 |
gtgatccaagttagta |
29555019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 597
Target Start/End: Original strand, 29555154 - 29555253
Alignment:
| Q |
498 |
aggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgac |
597 |
Q |
| |
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|||||||||| | |||||||| || || |||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |||||| |
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| T |
29555154 |
aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttcatttgac |
29555253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 29559120 - 29559194
Alignment:
| Q |
305 |
gaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgt |
379 |
Q |
| |
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||||||||||| |||||||| ||||||| | |||| ||||||||||||| ||||||||||||| || |||||| |
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| T |
29559120 |
gaaggaaaggttgtgtgtgtaacaggtggttcaggttatattgcttcatggcttgttaagtttcttctccaacgt |
29559194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 606
Target Start/End: Original strand, 87805 - 87900
Alignment:
| Q |
511 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgtt |
606 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||||| |||| | ||||||||| | ||||| ||||||||| |
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| T |
87805 |
aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgtt |
87900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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