View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_41 (Length: 368)
Name: NF6178_low_41
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 4458498 - 4458161
Alignment:
| Q |
12 |
gttggtgatgaaactgatgtttgggacaagatagagccaaatttgatcaatctatttgacattgaaagtatggtgaaacattttatgggttaccacaata |
111 |
Q |
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| T |
4458498 |
gttggtgatgaaactgatgtttggggcaagatagagccaaatttgatcaatctatttgacattgaaagtatggtgaaacattgtaggggttaccacaata |
4458399 |
T |
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| Q |
112 |
ttgttatgatttcttacttgaagttgtataaaggtatgaaattggatctgaatatttgtgaatgtcgtaagacaatttgataatcatgttatggatatga |
211 |
Q |
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| T |
4458398 |
ttgttatgatttcttacttgaagttgtataaaggtatgaaattgaatctgaatatttgtaaatgtcgtaagacaatttgataatcatgttatggatatga |
4458299 |
T |
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| Q |
212 |
ttaaagtagcaagggacaatcttaatgaagtggaaatatttgtcgaacactataattgaagaatcggagtatgtaccattgactcatgaagaaaggggga |
311 |
Q |
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| T |
4458298 |
ttaaagtagcaagggacaatcttaatgaagtggaaatatttgtcgaacactataattgaagaatcggagtatgtaccattgactcatgaagaaaggggga |
4458199 |
T |
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| Q |
312 |
gcttgagacattgattgaataggctactactaaacaaa |
349 |
Q |
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| T |
4458198 |
gcttgagagattggttgaataggctactactaaacaaa |
4458161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 17541877 - 17541805
Alignment:
| Q |
189 |
tgataatcatgttatggatatgattaaagtagcaagggacaatcttaatgaagtggaaatatttgtcgaacac |
261 |
Q |
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| T |
17541877 |
tgataatcatgttatggatatggttaaagttgcaagggctaatgggaatgaagtagaaatttttgttgaacac |
17541805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 17541999 - 17541895
Alignment:
| Q |
66 |
tttgacattgaaagtatggtgaaacattttatgggttaccacaatattgttatgatttcttacttgaagttgtataaaggtatgaaattggatctgaata |
165 |
Q |
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| T |
17541999 |
tttgagattgaaagtttggtgaaacattgtaagggttaccacataattgctaaattgtcttacatgaagccgtataaaggtgtgacatctgatctcaata |
17541900 |
T |
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| Q |
166 |
tttgt |
170 |
Q |
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| T |
17541899 |
tttgt |
17541895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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