View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_42 (Length: 360)

Name: NF6178_low_42
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_42
NF6178_low_42
[»] chr1 (2 HSPs)
chr1 (157-314)||(22589065-22589221)
chr1 (276-307)||(17126956-17126987)
[»] chr8 (4 HSPs)
chr8 (157-292)||(15437277-15437412)
chr8 (157-292)||(15528581-15528716)
chr8 (192-292)||(15348212-15348312)
chr8 (276-307)||(21946616-21946647)
[»] chr2 (2 HSPs)
chr2 (157-314)||(30936435-30936590)
chr2 (192-314)||(18365596-18365716)
[»] chr7 (2 HSPs)
chr7 (19-97)||(43262659-43262737)
chr7 (93-152)||(43262580-43262639)
[»] chr3 (4 HSPs)
chr3 (273-309)||(43585717-43585753)
chr3 (276-307)||(24909020-24909051)
chr3 (281-313)||(31986617-31986649)
chr3 (281-313)||(53707932-53707964)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 22589221 - 22589065
Alignment:
Q  157 tgaatttagctaaggatccgtgaaccattagagtt-agaggaacgttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatactgttaaaa 255  Q
    |||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  22589221 tgaacttagctaaggatccgtgaaccatcagagttgagaggaactttggtgtagttagtaacagggtcacgaaaattcaagtatcatcatattgttagaa 22589122  T
Q  256 gaactgcaaagttgtaattcttaaattttcaaactcttatatgtgatatgttatcttca 314  Q
    ||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  22589121 gaattgcaaagttgtaattcttaaattttcaaactct--tatctgatatgttatcttca 22589065  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Original strand, 17126956 - 17126987
Alignment:
Q  276 ttaaattttcaaactcttatatgtgatatgtt 307  Q
    ||||||||||||||||||||||||||||||||    
T  17126956 ttaaattttcaaactcttatatgtgatatgtt 17126987  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 292
Target Start/End: Complemental strand, 15437412 - 15437277
Alignment:
Q  157 tgaatttagctaaggatccgtgaaccattagagttagaggaacgttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatactgttaaaag 256  Q
    |||| |||||||||||||| |||||||| ||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  15437412 tgaacttagctaaggatccatgaaccatcagtttgagaggaactttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttagaag 15437313  T
Q  257 aactgcaaagttgtaattcttaaattttcaaactct 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  15437312 aactgcaaagttgtaattcttaaattttcaaactct 15437277  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 292
Target Start/End: Complemental strand, 15528716 - 15528581
Alignment:
Q  157 tgaatttagctaaggatccgtgaaccattagagttagaggaacgttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatactgttaaaag 256  Q
    |||| |||||||||||||| |||||||| ||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  15528716 tgaacttagctaaggatccatgaaccatcagtttgagaggaactttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttagaag 15528617  T
Q  257 aactgcaaagttgtaattcttaaattttcaaactct 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  15528616 aactgcaaagttgtaattcttaaattttcaaactct 15528581  T

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Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 15348312 - 15348212
Alignment:
Q  192 agaggaacgttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatactgttaaaagaactgcaaagttgtaattcttaaattttcaaactc 291  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15348312 agaggaactttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttagaagaactgcaaagttgtaattcttaaattttcaaactc 15348213  T
Q  292 t 292  Q
    |    
T  15348212 t 15348212  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Original strand, 21946616 - 21946647
Alignment:
Q  276 ttaaattttcaaactcttatatgtgatatgtt 307  Q
    ||||||||||||||||||||||||||||||||    
T  21946616 ttaaattttcaaactcttatatgtgatatgtt 21946647  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 30936435 - 30936590
Alignment:
Q  157 tgaatttagctaaggatccgtgaaccattagagtt-agaggaacgttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatactgttaaaa 255  Q
    |||| ||||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | |    
T  30936435 tgaacttagctaaggatccgtgaaccatcacagttgagaggaactttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgtt-aga 30936533  T
Q  256 gaactgcaaagttgtaattcttaaattttcaaactcttatatgtgatatgttatcttca 314  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||    
T  30936534 gaactgcaaagttgtaattctgaaattttcaaactct--tatctgatatgttatcttca 30936590  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 18365596 - 18365716
Alignment:
Q  192 agaggaacgttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatactgttaaaagaactgcaaagttgtaattcttaaattttcaaactc 291  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||  |    
T  18365596 agaggaactttggtgtagttagtaacagagtcatgaaaattcaagtatcatcatattgttagaagaactggaaagttgtaattcttaaattttcaaa--c 18365693  T
Q  292 ttatatgtgatatgttatcttca 314  Q
    || ||||||||||||||||||||    
T  18365694 ttttatgtgatatgttatcttca 18365716  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 43262737 - 43262659
Alignment:
Q  19 ggttttggagttggaatcctttcaatgccttgtgaagcatttaatgtacaccaagcttgaatgagtcttctaagagtgt 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43262737 ggttttggagttggaatcctttcaatgccttgtgaagcgtttaatgtacaccaagcttgaatgagtcttctaagagtgt 43262659  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 43262639 - 43262580
Alignment:
Q  93 agtgtaatctgatagcttttgttttgtaacatgacatgtcacgtttttctttgaaaatag 152  Q
    ||||||||||||||||  ||||||||||||| ||||||||| ||||||||| ||||||||    
T  43262639 agtgtaatctgatagcagttgttttgtaacaggacatgtcatgtttttcttcgaaaatag 43262580  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 43585717 - 43585753
Alignment:
Q  273 ttcttaaattttcaaactcttatatgtgatatgttat 309  Q
    |||||||||||||||||||||||||||||||||||||    
T  43585717 ttcttaaattttcaaactcttatatgtgatatgttat 43585753  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 24909051 - 24909020
Alignment:
Q  276 ttaaattttcaaactcttatatgtgatatgtt 307  Q
    ||||||||||||||||||||||||||||||||    
T  24909051 ttaaattttcaaactcttatatgtgatatgtt 24909020  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 31986617 - 31986649
Alignment:
Q  281 ttttcaaactcttatatgtgatatgttatcttc 313  Q
    |||||||||||||||||||||||| ||||||||    
T  31986617 ttttcaaactcttatatgtgatatattatcttc 31986649  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 53707932 - 53707964
Alignment:
Q  281 ttttcaaactcttatatgtgatatgttatcttc 313  Q
    |||||||||||||||||||||||| ||||||||    
T  53707932 ttttcaaactcttatatgtgatatattatcttc 53707964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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