View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_44 (Length: 350)

Name: NF6178_low_44
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_44
NF6178_low_44
[»] chr5 (6 HSPs)
chr5 (7-345)||(10101097-10101435)
chr5 (37-345)||(10214133-10214449)
chr5 (195-345)||(10104900-10105050)
chr5 (194-344)||(9678607-9678757)
chr5 (287-345)||(21036247-21036305)
chr5 (97-151)||(9678522-9678576)
[»] chr7 (6 HSPs)
chr7 (286-345)||(33032738-33032797)
chr7 (286-345)||(33120298-33120357)
chr7 (286-345)||(34906311-34906370)
chr7 (286-345)||(34913955-34914014)
chr7 (286-321)||(35702428-35702463)
chr7 (287-345)||(1470661-1470719)
[»] chr4 (1 HSPs)
chr4 (286-345)||(41108175-41108234)
[»] chr6 (2 HSPs)
chr6 (290-345)||(26384421-26384476)
chr6 (286-339)||(22366691-22366744)
[»] chr3 (1 HSPs)
chr3 (287-345)||(5130615-5130673)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 10101435 - 10101097
Alignment:
Q  7 ctaacaaccactaaatataaaagcacaatgcaaacacatttaaaatttcagatgtaaaatcttacctatcatgaaaatggaccccagatccttgaaacgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||| |||||||| ||||||||||    
T  10101435 ctaacaaccactaaatataaaagcacaatgcaaacacatttaaaatttcagctgtaaaatcttaccattcatgaaaatgggccccagattcttgaaacgg 10101336  T
Q  107 tagccccaccaaagctgcttttgttttgctacagaatcttgaaagattgcaagacttaaaagcattttatatctaaaacccaaagcgagagttacaacaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10101335 tagccccaccaaagctgcttttgttttgctacagaatcttgaaagattgcaaaacttaaaagcattttatatctaaaacccaaagcgagagttacaacaa 10101236  T
Q  207 aaaccatgaagttagtcccacgtctcttaatgatagaaaaactcaattgtttatattcctaaaactgagcacattcaagcacgaccttacttgaacagga 306  Q
    |||| | |||||||||||||| || |||||| | |||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  10101235 aaacaacgaagttagtcccacatcgcttaataacagaaaaactcaactgtttatatacctgaaactgagcacaatcaagcacgaccttacttgaacagga 10101136  T
Q  307 tctgttctataggatcatattaccgtgtccttcatttct 345  Q
    |||||||||||||||| || ||| |||||||| ||||||    
T  10101135 tctgttctataggatcgtactactgtgtccttgatttct 10101097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 10214133 - 10214449
Alignment:
Q  37 caaacacatttaaaatttcagatgtaaaatcttacctatcatgaaaa--------tggaccccagatccttgaaacggtagccccaccaaagctgctttt 128  Q
    |||||||||||||||| |||| | |||||||||||| ||||||||||        ||| |||||| | |||||| ||||| |||||||| ||||||||||    
T  10214133 caaacacatttaaaatctcagctttaaaatcttaccaatcatgaaaagctgaaaatgggccccagctacttgaagcggtatccccaccagagctgctttt 10214232  T
Q  129 gttttgctacagaatcttgaaagattgcaagacttaaaagcattttatatctaaaacccaaagcgagagttacaacaaaaaccatgaagttagtcccacg 228  Q
    ||||  ||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||| ||||||||  |||||||||||||||||     
T  10214233 gtttatctacataatcttgaaagattgcaagatttaaaagcattttatgtctaaaccccaaagggagagttgcaacaaaaggcatgaagttagtcccaca 10214332  T
Q  229 tctcttaatgatagaaaaactcaattgtttatattcctaaaactgagcacattcaagcacgaccttacttgaacaggatctgttctataggatcatatta 328  Q
    |  |||||| | ||||||||||||||||||||||  || |||||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||    
T  10214333 tagcttaataacagaaaaactcaattgtttatatagctgaaactgagcaaattcaagcacgaccttacttgaacaggatctgttctataggattgtacta 10214432  T
Q  329 ccgtgtccttcatttct 345  Q
    | |||||||| ||||||    
T  10214433 ctgtgtccttgatttct 10214449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 195 - 345
Target Start/End: Complemental strand, 10105050 - 10104900
Alignment:
Q  195 gagttacaacaaaaaccatgaagttagtcccacgtctcttaatgatagaaaaactcaattgtttatattcctaaaactgagcacattcaagcacgacctt 294  Q
    |||||||||| |||||||  || |||||||||| || |||||| | |||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||    
T  10105050 gagttacaacgaaaaccacaaacttagtcccacatcgcttaataacagaaaaactcaattgtttatatacctgaaactaagcacattctagcacgacctt 10104951  T
Q  295 acttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||| ||||||    
T  10104950 acttgaacaggatctgttctataggattatactactgtgtccttgatttct 10104900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 344
Target Start/End: Original strand, 9678607 - 9678757
Alignment:
Q  194 agagttacaacaaaaaccatgaagttagtcccacgtctcttaatgatagaaaaactcaattgtttatattcctaaaactgagcacattcaagcacgacct 293  Q
    ||||||| |||||||||||  || |||||||||| || |||||| | | |||   | |||||||||||| ||| ||||| |||  ||| |||||||||||    
T  9678607 agagttagaacaaaaaccacaaatttagtcccacatcgcttaataacaaaaacttttaattgtttatatacctgaaactcagcttatttaagcacgacct 9678706  T
Q  294 tacttgaacaggatctgttctataggatcatattaccgtgtccttcatttc 344  Q
    ||||||||||||||||||||||||||||| || ||| |||||||| |||||    
T  9678707 tacttgaacaggatctgttctataggatcgtactactgtgtccttgatttc 9678757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 21036305 - 21036247
Alignment:
Q  287 acgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    |||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  21036305 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 21036247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 9678522 - 9678576
Alignment:
Q  97 cttgaaacggtagccccaccaaagctgcttttgttttgctacagaatcttgaaag 151  Q
    |||||||||||||| | |||| | |||||||||||||| ||||||||||||||||    
T  9678522 cttgaaacggtagcacgaccagaactgcttttgttttgttacagaatcttgaaag 9678576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 33032797 - 33032738
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  33032797 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 33032738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 33120357 - 33120298
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  33120357 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 33120298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 34906311 - 34906370
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  34906311 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 34906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 34914014 - 34913955
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  34914014 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 34913955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 35702428 - 35702463
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggat 321  Q
    ||||||||||||||||||||||||||||||||||||    
T  35702428 cacgaccttacttgaacaggatctgttctataggat 35702463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 1470719 - 1470661
Alignment:
Q  287 acgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||| ||||| |||||||||||| || ||| |||||||| ||||||    
T  1470719 acgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttct 1470661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 41108234 - 41108175
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  41108234 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 41108175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 26384421 - 26384476
Alignment:
Q  290 accttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  26384421 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttct 26384476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 22366691 - 22366744
Alignment:
Q  286 cacgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttc 339  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||||||||    
T  22366691 cacgaccttatttgaacaggatctgttctataggatcgtactactgtgtccttc 22366744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 5130615 - 5130673
Alignment:
Q  287 acgaccttacttgaacaggatctgttctataggatcatattaccgtgtccttcatttct 345  Q
    ||||||||||||||||| ||||| || ||||||||| |||||| |||||||| ||||||    
T  5130615 acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttct 5130673  T

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