View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_45 (Length: 343)
Name: NF6178_low_45
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 37341109 - 37341421
Alignment:
| Q |
13 |
tgagatgaactatatggatctgggttatgtgcaattacaatcccgtgaccacacgcaatcaaccatatctgaactgtccgatcttgattggacagtcaag |
112 |
Q |
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| T |
37341109 |
tgagctgaactatatggatctgggttatgtgcaattacaatcccgtgaccacacgcaatcaatcatatctgaactgtccgatcttgattggacagtcaag |
37341208 |
T |
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| Q |
113 |
atgtgaccgactacatgcaattacatggcgcacaatccaaaccatattggggtgtactgtgtacacttatttatggaaagacaatataatcatgatttat |
212 |
Q |
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| T |
37341209 |
atgtgaccgactacatgcaattacatggcgcacaatccaaaccatattggggtgtactgtgtacacttatttatggaaagacaatataatcatgatttat |
37341308 |
T |
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| Q |
213 |
gtaattttgtatcacagaacattctcaatgctatcaaaatggtgataaaatgtgtactataccagaaattattggtctacaaatttgatttagtttctaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37341309 |
gtaattttgtatcacagaacattctcaatgctatcaaaatggtgataaaatgtgtactataccagaaattattggtctaaaaatttgatttagtttctaa |
37341408 |
T |
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| Q |
313 |
ctcaagtactgtt |
325 |
Q |
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||||||||||||| |
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| T |
37341409 |
ctcaagtactgtt |
37341421 |
T |
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