View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_53 (Length: 322)
Name: NF6178_low_53
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 4027219 - 4027400
Alignment:
| Q |
122 |
actatagatggatgagtacgtagaagaacatatttcacatacatgatttgtaccagagtaccataatggacgcatttcgaagttagattttctagcaaca |
221 |
Q |
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| T |
4027219 |
actatagatggatgagta----gcagaacatacttcacatacatgatttgtacaagagtaccaaaatggacgcatttcgaagttagattttctagcaaca |
4027314 |
T |
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| Q |
222 |
attccatatggcaatgccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaatt |
307 |
Q |
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| T |
4027315 |
attccatatggcaatgccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaatt |
4027400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 149 - 307
Target Start/End: Original strand, 4012943 - 4013101
Alignment:
| Q |
149 |
acatatttcacatacatgatttgtaccagagtaccataatggacgcatttcgaagttagattttctagcaacaattccatatggcaatgccttacttcca |
248 |
Q |
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| T |
4012943 |
acatatttcacatacatgaataatactagagtcccataatcgccgcatttctaagttagctgtcctagcaacaattccatattgcaatgccttacttccg |
4013042 |
T |
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| Q |
249 |
gaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaatt |
307 |
Q |
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| T |
4013043 |
gaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaatt |
4013101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 3990119 - 3990270
Alignment:
| Q |
156 |
tcacatacatgatttgtaccagagtaccataatggacgcatttcgaagttagattttctagcaacaattccatatggcaatgccttacttccagaatgta |
255 |
Q |
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| T |
3990119 |
tcacatacatgatttatgccagagtcccataatggccgcatttcaaatttagattttctagcaacaattccagctggaaatgccttacttccagaatccc |
3990218 |
T |
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| Q |
256 |
tgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaatt |
307 |
Q |
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| T |
3990219 |
tgtattgtgtctgaggaaatgcaaatcaatagaaacagaatcagatgcaatt |
3990270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 4004529 - 4004691
Alignment:
| Q |
149 |
acatatttcacatacatgatttgtaccagagtaccataatggacgcatttcgaagttagattttctagcaacaattccatatggcaatgccttacttcca |
248 |
Q |
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| T |
4004529 |
acatatttcacatacatgatttgtaccagaggctcggaatggccgtgtttccgaattatatgttctagcaatcattccatcttgcaatgccttacttccg |
4004628 |
T |
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| Q |
249 |
gaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattttaa |
311 |
Q |
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| T |
4004629 |
gaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcagggacaattttaa |
4004691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 3951627 - 3951478
Alignment:
| Q |
156 |
tcacatacatgatttgtaccagagtaccataatggacgcatttcgaagttagattttctagcaacaattccatatggcaatgccttacttccagaatgta |
255 |
Q |
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| T |
3951627 |
tcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatccggcaatgccttacttccataatgcc |
3951528 |
T |
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| Q |
256 |
tgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaa |
305 |
Q |
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| T |
3951527 |
tgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaa |
3951478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 149 - 305
Target Start/End: Original strand, 13400100 - 13400259
Alignment:
| Q |
149 |
acatatttcacatacatgatttgtaccagagtaccataatggacgcatttcgaagttagattttctagca---acaattccatatggcaatgccttactt |
245 |
Q |
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| T |
13400100 |
acatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttctagcagcaacaattccatatggcaatgccttattt |
13400199 |
T |
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| Q |
246 |
ccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaa |
305 |
Q |
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| T |
13400200 |
tcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaa |
13400259 |
T |
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