View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_56 (Length: 303)
Name: NF6178_low_56
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 10424772 - 10424488
Alignment:
| Q |
11 |
cacagaccacctgcagataataatgcaaacaaaaattagaaacaaaattctaaaaatttagaatatctcaaacaccaaacttaatgcatgtttagatcac |
110 |
Q |
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| T |
10424772 |
cacagaccacctgtagataataatgcaaacaaaa-ttagaaacaaaattataaaaatttagaatatctcaaacaccaaacttaatgcatgtttagatcac |
10424674 |
T |
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| Q |
111 |
gtttagtttgacgaaattacagttgcatcacaattttttaaatctctaaagtctaatcattgca------------ttacctcaaactttccgtcaatcc |
198 |
Q |
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| T |
10424673 |
atttagtttgacgaaattacagttgcatcgcaattttttaaatctctaaagtctaatcattgcagaatactctaatttacctcaaattttccgtcaatcc |
10424574 |
T |
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| Q |
199 |
aaacatacattataatgatccaaacactaaatttgagtgaaaaagttacttgtaatcaagttttaccaacctgtactttgtggtcag |
285 |
Q |
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| T |
10424573 |
aaacatacatt-gaatgatctaaacactaaatttgagtgaaaaagttacatgtaatcaagttttaccaacctgtactttgtggtcag |
10424488 |
T |
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