View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6178_low_59 (Length: 294)
Name: NF6178_low_59
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_59 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 27065683 - 27065407
Alignment:
| Q |
18 |
ctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065683 |
ctgttttgggtcacagtgttactgttcggtccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaa |
27065584 |
T |
|
| Q |
118 |
agttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattg |
217 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27065583 |
agttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattg |
27065484 |
T |
|
| Q |
218 |
gatccagtttctaaggcaaagactaatcatggtgttgctatttgccacttagatacaactgcttggagctcaaccca |
294 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27065483 |
gatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctccaccca |
27065407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 38 - 291
Target Start/End: Complemental strand, 27079380 - 27079127
Alignment:
| Q |
38 |
actgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgt |
137 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||| |||||||||| || | ||||| ||||| ||||| || |||||||||||||||||||| | |
|
|
| T |
27079380 |
actgttcgatcaactgagagtgtaaatggatcgggcaaaaatgtcatggttggaagggttaaagggatcaatgggggtaaagttactgaatctgtgtcat |
27079281 |
T |
|
| Q |
138 |
gccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattggatccagtttctaaggcaaa |
237 |
Q |
| |
|
| ||||| |||||||||||||||||| ||||||| || |||||||||||||| |||| ||| |||||||| ||||| || ||||| | ||||||| || |
|
|
| T |
27079280 |
gtcaccaaagtttgtttccttatttgctatactattgccactcggttccaaaggttcgtgtttatgaagcagatcttttagatcctgagtctaaggtgaa |
27079181 |
T |
|
| Q |
238 |
gactaatcatggtgttgctatttgccacttagatacaactgcttggagctcaac |
291 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
27079180 |
gataaatcatggtgttgctatttgtcacttagatacaactgcttggagcccaac |
27079127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 285
Target Start/End: Complemental strand, 27053218 - 27052974
Alignment:
| Q |
41 |
gttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgcc |
140 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| |||| ||||| ||| |||| |||| |||||||||||| || |||| || || ||||| || | |
|
|
| T |
27053218 |
gttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtaggtcaagtaaaggagataaatggtgggaacgttatggagtcagtgtcttgtc |
27053119 |
T |
|
| Q |
141 |
accagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattggatccagtttctaaggcaaagac |
240 |
Q |
| |
|
| || |||||||||||||| ||| |||| |||||||| ||||| |||||| ||| | ||||||||| |||| ||||| || ||||||| |||| |
|
|
| T |
27053118 |
atcaaagtttgtttccttacttgctatattactgtcattcggtgccaaatattcgaatttatgaagcgaatcttttggaccctaagtctaaggtgaagat |
27053019 |
T |
|
| Q |
241 |
taatcatggtgttgctatttgccacttagatacaactgcttggag |
285 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
27053018 |
aaatcatggtgttgcgatctgtcacttggatacaactgcttggag |
27052974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 14866387 - 14866523
Alignment:
| Q |
50 |
actgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtt |
149 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| || ||||||| |
|
|
| T |
14866387 |
actgagaatgtaaatgggtcgaagaaggatgttatggtgggtcgggttaatgggattaatggcgggaaagtgacccggtctgtttcgtgtcatcagagtt |
14866486 |
T |
|
| Q |
150 |
tgtttccttatttgttatactactgtcactcggttcc |
186 |
Q |
| |
|
||||||| |||||| | || || |||||||||||||| |
|
|
| T |
14866487 |
tgtttccgtatttgctttattattgtcactcggttcc |
14866523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University