View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_71 (Length: 254)
Name: NF6178_low_71
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_71 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 396895 - 396659
Alignment:
| Q |
18 |
agacctggattactcttatgacaggattgccatacgccttaacatatcgatattttcgagatcctgctaagaatgaaatcaaggctataatagcagaggc |
117 |
Q |
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| T |
396895 |
agacctggattactcttatgacaggattgccatacgccttaacatatcgatattttcgagatcctgctaagaatgaaatcaaggctataatagcagaggc |
396796 |
T |
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| Q |
118 |
caaggagacaccgaaacccaatgtccacataccggtatcttcgtaataaaccaaaatggtgttggaaaagagtgatccaacattgagtgcaaagtaaaag |
217 |
Q |
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| T |
396795 |
taaggagacaccgaaacccaatgtccacataccggtatcttcgtaataaaccaaaatggtgttggaaaatagtgatccaacattgagtgcaaagtaaaag |
396696 |
T |
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| Q |
218 |
taactaaagaaagcctctctggagttggtttgttgaa |
254 |
Q |
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| T |
396695 |
taactaaagaaagcctctctggagttggtttgttgaa |
396659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 3803753 - 3803972
Alignment:
| Q |
18 |
agacctggattactcttatgacaggattgccatacgccttaacatatcgatattttcgagatcctgctaagaatgaaatcaaggctataatagcagaggc |
117 |
Q |
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||||||| |||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3803753 |
agacctgaattactcttatgacaggattcccacacgccttaacataacgatatcttcgagatcctgctaagaatgaaatcaaggctataatagcagaggc |
3803852 |
T |
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| Q |
118 |
caaggagacaccgaaacccaatgtccacataccggtatcttcgtaataaaccaaaatggtgttggaaaagagtgatccaacattgagtgcaaagtaaaag |
217 |
Q |
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| T |
3803853 |
tagcgagacaccgaaacccaatgtccacataccggaatcttcataataaaccaaaatggtgttggaaaagagtgatccaacattgagtgcaaagtaaaag |
3803952 |
T |
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| Q |
218 |
taactaaagaaagcctctct |
237 |
Q |
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| T |
3803953 |
taactaaagaaagcctctct |
3803972 |
T |
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