View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_75 (Length: 249)

Name: NF6178_low_75
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_75
NF6178_low_75
[»] chr8 (3 HSPs)
chr8 (86-171)||(27059816-27059901)
chr8 (164-230)||(27065002-27065068)
chr8 (17-69)||(32329665-32329717)
[»] chr1 (1 HSPs)
chr1 (11-86)||(44682421-44682496)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 27059816 - 27059901
Alignment:
Q  86 ttgtggatattatggaggtgttagatctttgttaaacaaaatggggcgtcataaacctcttcggtgttttgggttggaattaggaa 171  Q
    ||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27059816 ttgtggatattctggaggtattagaactgtgttaaacaaaatggggcgtcataaacgtcttcggtgttttgggttggaattaggaa 27059901  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 27065002 - 27065068
Alignment:
Q  164 attaggaactcatatgtaacacacttgcataagagaaagtcatagtgtctctttggaagtttgacga 230  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  27065002 attaggaacttatatgtaacacacttgcataagagaaagtcatagcgtgtgtttggaagtttgacga 27065068  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 32329665 - 32329717
Alignment:
Q  17 tttattatgacaagtgggagggtgtaggagaggggtataccacgtaagggtgt 69  Q
    |||||| ||||||||||||||||||| |||||||||| |||| ||||||||||    
T  32329665 tttattgtgacaagtgggagggtgtatgagaggggtacaccatgtaagggtgt 32329717  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 44682421 - 44682496
Alignment:
Q  11 ttatactttattatgacaagtgggagggtgtaggagaggggtataccacgtaagggtgtttacctatcaactctct 86  Q
    ||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  44682421 ttatattttattgtgacaagtgggagggtgtaagagaggggtacaccacgtaagggtgtttacctatcagctctct 44682496  T

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