View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6178_low_76 (Length: 248)
Name: NF6178_low_76
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6178_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 51296894 - 51296729
Alignment:
| Q |
66 |
cacctctaagaaatttccaataaaagtagtaaaaattcattccatgtggagaaaaagtgaattgttggttacatgtattatagtttaccaaacatatagc |
165 |
Q |
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| T |
51296894 |
cacctctaagaaatttccaataaaagtagtaaaaattcattccatgtggggaaaaagtgaattgttggttatatgtactatagtttaccaaacatatagc |
51296795 |
T |
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| Q |
166 |
ataaaattttgggtgaaatgatgtaagaagaaccaagaagtgacaaatataattgtgtgttattcc |
231 |
Q |
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| T |
51296794 |
ataaaattttgggtgaaatgatgtaagaagaaccaagaagtgacaaatataattgagtgttattcc |
51296729 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 51297248 - 51297218
Alignment:
| Q |
13 |
catcatcagacggtgatcgactaattgcatc |
43 |
Q |
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| T |
51297248 |
catcatcagacggtgatcgactaattgcatc |
51297218 |
T |
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