View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6178_low_80 (Length: 239)

Name: NF6178_low_80
Description: NF6178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6178_low_80
NF6178_low_80
[»] chr4 (15 HSPs)
chr4 (1-231)||(1755494-1755724)
chr4 (105-172)||(553759-553826)
chr4 (118-173)||(7225163-7225218)
chr4 (74-177)||(548010-548113)
chr4 (127-175)||(3437631-3437679)
chr4 (86-164)||(661866-661944)
chr4 (49-174)||(642005-642130)
chr4 (44-177)||(8186287-8186420)
chr4 (116-172)||(645108-645163)
chr4 (90-210)||(21833251-21833371)
chr4 (52-100)||(53760229-53760277)
chr4 (41-79)||(1524243-1524281)
chr4 (131-177)||(1547718-1547764)
chr4 (51-177)||(7308546-7308672)
chr4 (114-155)||(1545881-1545922)
[»] chr8 (8 HSPs)
chr8 (53-232)||(17642872-17643051)
chr8 (41-172)||(17635581-17635712)
chr8 (44-231)||(18314566-18314753)
chr8 (41-171)||(32151969-32152099)
chr8 (116-165)||(28246058-28246107)
chr8 (39-156)||(34935910-34936027)
chr8 (68-159)||(5766557-5766648)
chr8 (71-159)||(14004156-14004244)
[»] chr3 (4 HSPs)
chr3 (51-177)||(51763325-51763451)
chr3 (51-171)||(51113132-51113252)
chr3 (116-172)||(1657527-1657583)
chr3 (84-231)||(13469617-13469764)
[»] chr7 (4 HSPs)
chr7 (35-181)||(10615704-10615853)
chr7 (105-177)||(10169039-10169111)
chr7 (105-177)||(10176564-10176636)
chr7 (41-177)||(7977868-7978004)
[»] chr1 (4 HSPs)
chr1 (51-231)||(7555139-7555319)
chr1 (42-231)||(19467354-19467546)
chr1 (54-228)||(9587205-9587379)
chr1 (134-174)||(17352688-17352728)
[»] chr5 (5 HSPs)
chr5 (41-174)||(32268533-32268666)
chr5 (138-230)||(28695545-28695637)
chr5 (114-164)||(20477438-20477488)
chr5 (40-170)||(41900418-41900548)
chr5 (116-172)||(28532813-28532869)
[»] chr6 (18 HSPs)
chr6 (116-164)||(6602725-6602773)
chr6 (41-159)||(9412137-9412252)
chr6 (40-176)||(7138147-7138286)
chr6 (116-179)||(6417085-6417148)
chr6 (70-177)||(7132300-7132407)
chr6 (108-170)||(6423907-6423969)
chr6 (70-176)||(7135224-7135330)
chr6 (116-177)||(8913420-8913481)
chr6 (108-164)||(6395545-6395601)
chr6 (116-172)||(11936038-11936094)
chr6 (116-172)||(11948018-11948074)
chr6 (116-165)||(6410702-6410751)
chr6 (108-165)||(19633107-19633164)
chr6 (119-171)||(14809700-14809752)
chr6 (108-172)||(28935338-28935402)
chr6 (119-170)||(6427183-6427234)
chr6 (116-160)||(6593931-6593975)
chr6 (119-171)||(6596238-6596290)
[»] chr2 (2 HSPs)
chr2 (87-177)||(45244819-45244909)
chr2 (127-177)||(1036622-1036672)
[»] scaffold1155 (1 HSPs)
scaffold1155 (51-155)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (51-155)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (51-155)||(30584-30688)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1755724 - 1755494
Alignment:
Q  1 cctcgttgacctcacacaattttctggtgatatggacgcacttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1755724 cctcgttgacctcacacacttttctggtgatatggacgcacttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaa 1755625  T
Q  101 cacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgact 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1755624 cacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgact 1755525  T
Q  201 tcttcctcattgctgattgtttccctttgct 231  Q
    |||||||||||||||| ||||||||||||||    
T  1755524 tcttcctcattgctgactgtttccctttgct 1755494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 553826 - 553759
Alignment:
Q  105 ccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    |||||||| | |||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  553826 ccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 7225163 - 7225218
Alignment:
Q  118 tgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcca 173  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  7225163 tgggttgcaagctctttctcaaaatattacaactttgacctctctcacatgttcca 7225218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 548113 - 548010
Alignment:
Q  74 cttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcca 173  Q
    ||||||||| | |||||||| ||||||| |  ||||||||| ||||| |||||||  ||| | | |||| |||||||||||| ||||||||| |||||||    
T  548113 cttacatcgctcaatctctctaaccaacccttcattcccacaaatggcttgcaagtcttcgcacgaaagtttacaactttgaactctctcacttgttcca 548014  T
Q  174 acat 177  Q
    ||||    
T  548013 acat 548010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 3437631 - 3437679
Alignment:
Q  127 agctttctctcaaaagattacaactttgacctctctcacatgttccaac 175  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  3437631 agctttctcccaaaagattacaactttgacctctctcagttgttccaac 3437679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 661944 - 661866
Alignment:
Q  86 aatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctca 164  Q
    |||||||||||||||  | |||||||| | ||||| |||| ||||||||| ||| | ||||||||||| ||||||||||    
T  661944 aatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctca 661866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 642130 - 642005
Alignment:
Q  49 ccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattaca 148  Q
    |||||||||||||||||  || || || || ||  | ||||||||||||| |  | |||||||  | |||||||||||| ||||||| || |||||| ||    
T  642130 ccaaatctctcgtttccagttaaatctcacgtcactcaatctctccaaccgatccaccattcctgctaatgggttgcaatctttctcccagaagatttca 642031  T
Q  149 actttgacctctctcacatgttccaa 174  Q
    ||||| || ||||||| |||||||||    
T  642030 actttaacttctctcaaatgttccaa 642005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 8186287 - 8186420
Alignment:
Q  44 ctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaaga 143  Q
    ||||||||  ||||||||||  | ||||| || |||||  | |||||||| ||| ||| | |||||||  | ||||| |||| || | |||| | ||| |    
T  8186287 ctctgccatctctctcgtttttcgttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaata 8186386  T
Q  144 ttacaactttgacctctctcacatgttccaacat 177  Q
    |||||||||||||||| |||||||||||||||||    
T  8186387 ttacaactttgacctcactcacatgttccaacat 8186420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 645163 - 645108
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    ||||||||||||||||  |||||||| |||| |||||| ||||||||||||||||||    
T  645163 aatgggttgcaagctta-tctcaaaacattaaaactttaacctctctcacatgttcc 645108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 21833251 - 21833371
Alignment:
Q  90 tctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctcca 189  Q
    |||||||| ||| | |||||||| |  ||||||||| || |||  | ||||| ||||| ||||||||||||||||| |||||||| || ||| || || |    
T  21833251 tctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaatttcaa 21833350  T
Q  190 taccaatgacttcttcctcat 210  Q
    ||||| |||| | ||||||||    
T  21833351 taccactgacctgttcctcat 21833371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 53760229 - 53760277
Alignment:
Q  52 aatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaa 100  Q
    |||||||||||||||||||||||| |||||  | |||||||||||||||    
T  53760229 aatctctcgtttcccattgaaactcacatcactcaatctctccaaccaa 53760277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 1524243 - 1524281
Alignment:
Q  41 cttctctgccaaatctctcgtttcccattgaaacttaca 79  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  1524243 cttctctgccaaatctctcgttttccattgaaccttaca 1524281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 1547718 - 1547764
Alignment:
Q  131 ttctctcaaaagattacaactttgacctctctcacatgttccaacat 177  Q
    ||||| ||||| |||||||||||||| ||||||||||||||| ||||    
T  1547718 ttctcccaaaacattacaactttgacatctctcacatgttcccacat 1547764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 7308672 - 7308546
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    ||||||||||||||||| |||| |||| | |  || |||||||| || |||    ||||||||   ||||| ||| |||||| || || |||||||||||    
T  7308672 aaatctctcgtttcccaatgaaccttagagcacttgatctctcctacaaacctatcattcccaaagatgggctgcgagctttgtcccagaagattacaac 7308573  T
Q  151 tttgacctctctcacatgttccaacat 177  Q
    |||||||| |||||| |||||| ||||    
T  7308572 tttgacctgtctcacttgttcccacat 7308546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 1545922 - 1545881
Alignment:
Q  114 ccaatgggttgcaagctttctctcaaaagattacaactttga 155  Q
    |||||||||||| | ||||||||||||| |||||||||||||    
T  1545922 ccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 17642872 - 17643051
Alignment:
Q  53 atctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactt 152  Q
    |||||| |||| ||||||||||| |||||  | |||||||||||||| | | ||||||||||||||||||| ||||||||||| || || ||||||||||    
T  17642872 atctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactt 17642971  T
Q  153 tgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgattgtttccctttgcta 232  Q
    ||||||||||||| |||||| |||| |   |||||| || |  |||| |   |||||| |||||||||||||||||||||    
T  17642972 tgacctctctcacttgttcccacatgggaaatctccgtagctctgaccttaccctcatcgctgattgtttccctttgcta 17643051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 17635581 - 17635712
Alignment:
Q  41 cttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaa 140  Q
    ||||||||| ||||||||| ||| ||||||||||| | |||  | ||||| |||||||||| | ||||||| || |||||||| | ||||||||| |  |    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccgga 17635680  T
Q  141 agattacaactttgacctctctcacatgttcc 172  Q
    | ||||||||||||||||||||||| ||||||    
T  17635681 atattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 18314566 - 18314753
Alignment:
Q  44 ctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaaga 143  Q
    ||||| |||||||||| ||||||||||||||| | ||   |  ||||||||   |||| | |||||||| | ||||| || | || |||||||||||| |    
T  18314566 ctctgtcaaatctctcttttcccattgaaactcaaatgactcgatctctcctgtcaacccaccattcccgcaaatggcttacgagttttctctcaaaata 18314665  T
Q  144 ttacaactttgacctctctcacatgttccaaca-tcgctcatctccataccaatgacttcttcctcattgctgattgtttccctttgct 231  Q
    |||||||||||||||| ||| |||||||  ||| ||  || |||||||  || |||  |||||||||||||||||||||||||||||||    
T  18314666 ttacaactttgacctcactctcatgttcttacattcaatc-tctccatggcactgatctcttcctcattgctgattgtttccctttgct 18314753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 32152099 - 32151969
Alignment:
Q  41 cttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaa 140  Q
    ||||| ||||||||||||| |||||| ||||| || |||||  | |||||||||||| |||   |||| ||    |||||| | ||||||||||| ||||    
T  32152099 cttctttgccaaatctctcatttcccgttgaacctcacatcactcaatctctccaacaaacttaccatacctgtgaatgggatacaagctttctcccaaa 32152000  T
Q  141 agattacaactttgacctctctcacatgttc 171  Q
    | ||||||||||||||||||||||| |||||    
T  32151999 acattacaactttgacctctctcacttgttc 32151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 28246058 - 28246107
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcac 165  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  28246058 aatgggttgcaagctttctctcaaaacattaaaactttaacctctctcac 28246107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 34935910 - 34936027
Alignment:
Q  39 cacttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctca 138  Q
    ||||||| || ||||| ||| ||||||||||||| ||||||||  | |||||||||||||| | |  ||||||    ||||| |||| || |||||| ||    
T  34935910 cacttctatgtcaaatttctagtttcccattgaaccttacatcactcaatctctccaaccatcccatcattccacaaaatggtttgcgagttttctcaca 34936009  T
Q  139 aaagattacaactttgac 156  Q
    ||| ||||||||||||||    
T  34936010 aaatattacaactttgac 34936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 5766557 - 5766648
Alignment:
Q  68 ttgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctc 159  Q
    |||||||| |||||| | ||||| |||||||||| |  | ||||  | ||||| |||| |||||||||||| || |||||||||||||||||    
T  5766557 ttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctc 5766648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 14004244 - 14004156
Alignment:
Q  71 aaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctc 159  Q
    ||||| |||||| | ||||| |||||||||| |  | ||||  | ||||| |||| |||||||||||| || |||||||||||||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctc 14004156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 51763325 - 51763451
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||| || |   || |||| || |||||||||| || ||| || ||||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  151 tttgacctctctcacatgttccaacat 177  Q
    |||||| |||||||| |||||| ||||    
T  51763425 tttgacatctctcacttgttcccacat 51763451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 51113132 - 51113252
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    |||||||||||||||||||||||||||| ||  | ||| |||||||| ||  |   |||||||| ||||| |||| |||||||||  |||| ||||||||    
T  51113132 aaatctctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaac 51113231  T
Q  151 tttgacctctctcacatgttc 171  Q
    | ||||||||||||| |||||    
T  51113232 tctgacctctctcacttgttc 51113252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 1657583 - 1657527
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||    
T  1657583 aatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgtgttcc 1657527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 13469617 - 13469764
Alignment:
Q  84 ttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctca 183  Q
    |||||||||||||||||| | |  ||||  | |||||||| | ||||||||| ||||||| ||||||  ||||||||||||| |||||| |||| ||| |    
T  13469617 ttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcccacattgctaa 13469716  T
Q  184 tctccataccaatgacttcttcctcattgctgattgtttccctttgct 231  Q
    | || ||| || |||| | ||||| ||||| || ||||| || |||||    
T  13469717 tttcaatagcagtgacctgttccttattgcagaatgttttccgttgct 13469764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 181
Target Start/End: Complemental strand, 10615853 - 10615704
Alignment:
Q  35 gacgcacttctctgccaaatctctcgtttcccat---tgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctt 131  Q
    ||||| |||||| || ||||||||||||||||||   ||||  | |||||  ||||| | |||||||||| | |  ||||| | |||||||| | |||||    
T  10615853 gacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctt 10615754  T
Q  132 tctctcaaaagattacaactttgacctctctcacatgttccaacatcgct 181  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||||||    
T  10615753 tctcccaaaagattacaactttgacctctctcacttgttcccacatcgct 10615704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 10169039 - 10169111
Alignment:
Q  105 ccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat 177  Q
    |||||||| | |||||||||| || |||||||||||| |||| |||||||||||||||||| |||||| ||||    
T  10169039 ccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacat 10169111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 10176564 - 10176636
Alignment:
Q  105 ccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat 177  Q
    |||||||| | |||||||||| || |||||||||||| |||| |||||||||||||||||| |||||| ||||    
T  10176564 ccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgacat 10176636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 7978004 - 7977868
Alignment:
Q  41 cttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaa 140  Q
    |||||| ||||||| ||| |||||||||||||| | || ||  | |||||||||||||| |   |||||||  |  ||||||||| || |||||| ||||    
T  7978004 cttctccgccaaatttcttgtttcccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaa 7977905  T
Q  141 agattacaactttgacctctctcacatgttccaacat 177  Q
    | ||| ||||||||||||| |||| |||||| |||||    
T  7977904 atattgcaactttgacctcactcaaatgttctaacat 7977868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 7555319 - 7555139
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    |||||||| ||||||||||||| || |||||  || || | |||||||||| | |||| ||  | | ||| |||| ||||||||| ||||| ||||||||    
T  7555319 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 7555220  T
Q  151 tttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgattgtttccctttgct 231  Q
    ||| ||||| ||||| |||||||| || | |  | || ||| ||||||||| || ||||||||||| ||||||||||||||    
T  7555219 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 7555139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 19467354 - 19467546
Alignment:
Q  42 ttctctgccaaatctctcgtttcccattgaaa---cttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctca 138  Q
    |||||||  ||||||||| |||||||||||||   || |||||  | | | ||||||||  |||| |||||||| | |||||||||| || |||| ||||    
T  19467354 ttctctgtaaaatctctcatttcccattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactca 19467453  T
Q  139 aaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgattgtttccctttgct 231  Q
    ||| ||||||||||||||||||||||| |||| | |||| ||  || || |||||| |||| | |||||||| || || ||||| ||||||||    
T  19467454 aaatattacaactttgacctctctcacttgtttcgacattgcagatttcaataccactgacctgttcctcatcgcggaatgttttcctttgct 19467546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 9587379 - 9587205
Alignment:
Q  54 tctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaacttt 153  Q
    ||||| |||||||||||||||| |||||| | ||||||||||  |||  |  ||||||| | | ||||||||| ||||||||   |||||||||||| ||    
T  9587379 tctcttgtttcccattgaaactcacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgctttctccttaaagattacaacgtt 9587280  T
Q  154 gacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgattgtttcccttt 228  Q
    ||| |||||||  ||||| ||||||  |  | || |||  |||||||| |||||||||||  | |||||||||||    
T  9587279 gacatctctcatttgttcaaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttt 9587205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 17352728 - 17352688
Alignment:
Q  134 tctcaaaagattacaactttgacctctctcacatgttccaa 174  Q
    ||||||||||||||||| |||||||||||||  ||||||||    
T  17352728 tctcaaaagattacaacattgacctctctcatttgttccaa 17352688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 32268666 - 32268533
Alignment:
Q  41 cttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaa 140  Q
    |||||||| |||||||||||||| ||||||||||| || ||  | |||||||| ||| ||  |  ||||||||| | |||||||||  |||| ||  | |    
T  32268666 cttctctgtcaaatctctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaga 32268567  T
Q  141 agattacaactttgacctctctcacatgttccaa 174  Q
    ||||||||||||||||||||||||| ||||||||    
T  32268566 agattacaactttgacctctctcacttgttccaa 32268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 28695545 - 28695637
Alignment:
Q  138 aaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgattgtttccctttgc 230  Q
    |||| ||||||||| ||||||||||||| |||||| || | ||   |||||||| || |||  ||||| ||||||||||||| ||||||||||    
T  28695545 aaaacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgc 28695637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 20477438 - 20477488
Alignment:
Q  114 ccaatgggttgcaagctttctctcaaaagattacaactttgacctctctca 164  Q
    ||||||||||||| || ||||| ||||| |||| |||||||||||||||||    
T  20477438 ccaatgggttgcatgcattctcccaaaatattaaaactttgacctctctca 20477488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 41900418 - 41900548
Alignment:
Q  40 acttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaa 139  Q
    |||||| || |||||||||| ||| ||||||||||| |||||  | || |||||  |||||  || ||| ||| |   |||||| | |||||| ||  ||    
T  41900418 acttctttgtcaaatctctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaa 41900517  T
Q  140 aagattacaactttgacctctctcacatgtt 170  Q
    |||||||||||||||||||||||||| ||||    
T  41900518 aagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 28532869 - 28532813
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    ||||| |||| |||||| || ||||| |||||||||||||||||| |||| ||||||    
T  28532869 aatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 28532813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 6602725 - 6602773
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctca 164  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6602725 aatgggttgcaagctttctctcaaaagattactactttgacctctctca 6602773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 9412252 - 9412137
Alignment:
Q  41 cttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaa 140  Q
    |||||| | |||||||||||||| |||||||||||  ||||  |||||||||||||||| | | |||||||| |   |||||||| ||||||||| ||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaa 9412156  T
Q  141 agattacaactttgacctc 159  Q
    | ||||||||||| |||||    
T  9412155 atattacaactttaacctc 9412137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 7138286 - 7138147
Alignment:
Q  40 acttctctgccaaatctctcgtttcccatt---gaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctct 136  Q
    ||||||| || ||||||||| ||||||| |   |||||| |||||| ||| | |||||||||||||| || ||||  | |||||||||| |||||||||     
T  7138286 acttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcc 7138187  T
Q  137 caaaagattacaactttgacctctctcacatgttccaaca 176  Q
    ||||| |||||||||||| | ||||||   ||||||||||    
T  7138186 caaaacattacaactttggcatctctcgattgttccaaca 7138147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 6417148 - 6417085
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcg 179  Q
    |||||||| | ||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||    
T  6417148 aatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacatcg 6417085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 7132407 - 7132300
Alignment:
Q  70 gaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgt 169  Q
    |||||| |||||| ||| | |||||||||||||| || ||||  | |||||||||| ||||||||| ||||| |||||||||||| | ||||||   |||    
T  7132407 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgt 7132308  T
Q  170 tccaacat 177  Q
    ||||||||    
T  7132307 tccaacat 7132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  108 ttcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgtt 170  Q
    ||||||| |||||||||| ||||||||| ||||| || |||||||||||||||||||| ||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 7135330 - 7135224
Alignment:
Q  70 gaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgt 169  Q
    |||||| |||||| ||| | |||||||||||||| || ||||  | |||||||||| ||||||||| ||||| |||||||||||| | ||||||   |||    
T  7135330 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgt 7135231  T
Q  170 tccaaca 176  Q
    |||||||    
T  7135230 tccaaca 7135224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 8913420 - 8913481
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat 177  Q
    |||||||||| || ||| ||| |||||||||||||||||||||||||||  |||||||||||    
T  8913420 aatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgttccaacat 8913481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 6395601 - 6395545
Alignment:
Q  108 ttcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctca 164  Q
    |||||||  |||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  6395601 ttcccacagatgggttgcaagctctctcccaaaatattacaactttgacctctctca 6395545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 11936038 - 11936094
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    |||||||||||||||||||||||||| |||| || ||| ||||||||||| ||||||    
T  11936038 aatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttcc 11936094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 11948018 - 11948074
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    |||||||||||||||||||||||||| |||| || ||| ||||||||||| ||||||    
T  11948018 aatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttcc 11948074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 6410751 - 6410702
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctctctcac 165  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||| ||||    
T  6410751 aatgggttgcaagttttctcccaaaacattacaactttgacctctttcac 6410702  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 19633164 - 19633107
Alignment:
Q  108 ttcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcac 165  Q
    ||||||| |||||||||| |||||||||  |||  |||||||||||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctcac 19633107  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 14809752 - 14809700
Alignment:
Q  119 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttc 171  Q
    |||||||||| |||||| ||||| |||||||||||| |||||||||| |||||    
T  14809752 gggttgcaagatttctcccaaaacattacaactttggcctctctcacttgttc 14809700  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 28935402 - 28935338
Alignment:
Q  108 ttcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcc 172  Q
    ||||||| || ||||||| ||| ||||| ||||| ||||||||||| ||||| ||||||||||||    
T  28935402 ttcccacaaaagggttgcgagccttctcccaaaacattacaactttaacctcactcacatgttcc 28935338  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 6427234 - 6427183
Alignment:
Q  119 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgtt 170  Q
    |||||||||| |||||| ||||| |||||||||||||||| |||||| ||||    
T  6427234 gggttgcaagttttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 6593931 - 6593975
Alignment:
Q  116 aatgggttgcaagctttctctcaaaagattacaactttgacctct 160  Q
    ||||| |||| || |||||| ||||||||||||||||||||||||    
T  6593931 aatggtttgcgagttttctcacaaaagattacaactttgacctct 6593975  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 6596238 - 6596290
Alignment:
Q  119 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttc 171  Q
    ||||||| || |||||| ||||| || |||||||||||||||||||| |||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 45244819 - 45244909
Alignment:
Q  87 atctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat 177  Q
    |||||||| |||||  | |||||||| | |||||||||||||||||||| ||||  |||| || ||||||||||||||  |||| ||||||    
T  45244819 atctctccgaccaaagcaccattcccgcgaatgggttgcaagctttctcccaaactattagaaatttgacctctctcatttgttacaacat 45244909  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 1036622 - 1036672
Alignment:
Q  127 agctttctctcaaaagattacaactttgacctctctcacatgttccaacat 177  Q
    ||||||||| ||||| |||||||||||||| |||||||  |||||||||||    
T  1036622 agctttctcccaaaatattacaactttgacttctctcatttgttccaacat 1036672  T

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Target: scaffold1155 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    |||||||||||||||||||||| || |||||  | ||||||||| |||||| |   |||||| |  ||||||||| || ||| || ||||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  151 tttga 155  Q
    |||||    
T  1921 tttga 1925  T

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Target: scaffold0345 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    |||||||||||||||||||||| || |||||  | ||||||||| |||||| |   |||||| |  ||||||||| || ||| || ||||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  151 tttga 155  Q
    |||||    
T  8295 tttga 8291  T

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Target: scaffold0105 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  51 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaatgggttgcaagctttctctcaaaagattacaac 150  Q
    |||||||||||||||||||||| || |||||  | ||||||||| |||||| |   |||||| |  ||||||||| || ||| || ||||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  151 tttga 155  Q
    |||||    
T  30684 tttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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